View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5184_high_1 (Length: 602)
Name: NF5184_high_1
Description: NF5184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5184_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 443; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 18 - 592
Target Start/End: Original strand, 4764319 - 4764905
Alignment:
| Q |
18 |
taatcaagatcaaaaaacaaagttttttaactagccttatccaccagctaacttgtctttacacacgacttaaaaacccacacatatcgttgcaactata |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4764319 |
taatcaagatcaaaaaacaaagttttttaactagccttatccaccagctaacttgtctttacacacgacttaaaaacccacacatatcgttgcaactata |
4764418 |
T |
|
| Q |
118 |
cagcatattctttcgatcaatcaaactagttcagagaaagcaatcatattgcatgaaagcatttacgtatttcctttataaaagaatgaagaccacaaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4764419 |
cagcatattctttcgatcaatcaaactagttcagagaaagcaatcatattgcatgaaagcatttacgtatttcctttataaaagaatgaagaccacaaaa |
4764518 |
T |
|
| Q |
218 |
ttgtttggcatgcaaaataatattggtaaactggggagtgggaaaacctaacatattcaaaatgccactcaaacacttctagataaaaggacgattaaga |
317 |
Q |
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| T |
4764519 |
ttgtttggcatgcaaaataatattggtaaactggggagtgggaaaacctaacatattcaaaatgccactcaaacacttctagataaaaggacgattaaga |
4764618 |
T |
|
| Q |
318 |
aataaatgatttgaattttatnnnnnnnnttatatgactggnnnnnnntccgccgctcctagggttagtgtcgccgctcccttgtgagggattctgctgt |
417 |
Q |
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| T |
4764619 |
aataaatgatttgaattttat-aaaaaaattatatcactggaaaaaaagccgccgctcctagggttagcgtcgccactcccttgtgagggattctgttgt |
4764717 |
T |
|
| Q |
418 |
ggtttggtgagatatctgctcctcttaacgttttttgtttccacttcatagagataaaaggtgcttccactttcnnnnnnncctcggatcatgttatgat |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4764718 |
ggtttggtgagatatctgctcctcttaacgttttttgtttccacttcatagagataaaaggtgcttccactttcttttcttcctcggatcatgttatgat |
4764817 |
T |
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| Q |
518 |
cccgtgatcc--------------tggcatcatatacattttcattacaagaacaaaaggtgttattatctctcttatgttctcctatg |
592 |
Q |
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| T |
4764818 |
cccgtgatccctttcttttccaattggcatcatataca-tttcattacaagaacaaaaggtgttattatctctcttatgttctcctatg |
4764905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 30 - 210
Target Start/End: Original strand, 4670218 - 4670398
Alignment:
| Q |
30 |
aaaaacaaagttttttaactagccttatccaccagctaacttgtctttacacacgacttaaaaacccacacatatcgttgcaactatacagcatattctt |
129 |
Q |
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|||||| |||||||| ||||||||||||||||| |||||||||||||||||||||| | |||||||||||| |||| ||||||||||| ||||||||||| |
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| T |
4670218 |
aaaaacgaagtttttgaactagccttatccaccggctaacttgtctttacacacgattaaaaaacccacacttatctttgcaactatagagcatattctt |
4670317 |
T |
|
| Q |
130 |
tcgatcaatcaaactagttcagagaaagcaatcatattgcatgaaagcatttacgtatttcctttataaaagaatgaagac |
210 |
Q |
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| T |
4670318 |
tcgatcaatcaaactagtccagagaaagcaatcatattgcatgaaagcatttacgggattcttttataaaagaatgaagac |
4670398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 290 - 324
Target Start/End: Original strand, 4670407 - 4670441
Alignment:
| Q |
290 |
acacttctagataaaaggacgattaagaaataaat |
324 |
Q |
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|||||||||||||||||||| |||||||||||||| |
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| T |
4670407 |
acacttctagataaaaggacaattaagaaataaat |
4670441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 451
Target Start/End: Complemental strand, 19061338 - 19061253
Alignment:
| Q |
367 |
ccgccgctcctagggttagtgtcgccgct-cccttgtgagggattctgctgtggtttggtgagatatctgctcctcttaacgtttt |
451 |
Q |
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||||||||||||||||| || ||||||| ||||||||||||||| ||| || ||| | |||||| ||| |||| || |||||||| |
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| T |
19061338 |
ccgccgctcctagggttcttgccgccgctacccttgtgagggattttgccgtcgttcgttgagatttcttctcccctgaacgtttt |
19061253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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