View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5184_high_2 (Length: 494)
Name: NF5184_high_2
Description: NF5184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5184_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 23 - 488
Target Start/End: Complemental strand, 3981341 - 3980871
Alignment:
| Q |
23 |
ctgagtgtttgttttattctccccaaatagaaaagaagcgtcactcttcaattcattcccgctgaggtcaagaatatcaaaactaacttgttataagaac |
122 |
Q |
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| T |
3981341 |
ctgagtgtttgttttattctccccaaatagaaaagaagcgtcactcttcaattcattcccgctgaggtcaagaatatcaaaattaacttgccataagaac |
3981242 |
T |
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| Q |
123 |
ctcgggatatgacccgagagaggtttcacgaaagaataggaagaagttggacactaaggagccgaatgtaggtgggattcttccattcagcttgttttgt |
222 |
Q |
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| T |
3981241 |
ctcgggatatgacccaagataggtttcccgaaagaatacaaagaagttgggcactagggagccgaatgtaggtgggattcttccattcagcttgttttgt |
3981142 |
T |
|
| Q |
223 |
tgaaggttcattcaccgaagatttgggggcctggcgaagaaagtgggaatggaa-----ttaccggttgctgtcgagtttgagggaatacacgtgcctta |
317 |
Q |
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| T |
3981141 |
tgaaggtttattcgctgaagatttgggagcctaacaaagaaagtgggaatggaactagttaatcggttgttgtcgagtttgagggtatgcatgtgtctta |
3981042 |
T |
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| Q |
318 |
acctcattaagaaattagggataggtccggagaggttagggttaatgttgaggattaaggtctatgggtatgtgagctctggaatggatgctgggatttt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3981041 |
acctcattaagaaattagggataggtccggagaggttagggttaatgttgaggattaaggtctatgggtacgtgagctctggaatggatgctgggatttc |
3980942 |
T |
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| Q |
418 |
gccgacgattttgttcgagctaaaaatcgcgaggatgttgacacgagaggacatggttttcagaattatct |
488 |
Q |
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||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3980941 |
gcccacgattttgttcgagctgaaaatcgtgaggatgttgacacgagaggacatggttttcagaattatct |
3980871 |
T |
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