View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5184_high_5 (Length: 329)
Name: NF5184_high_5
Description: NF5184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5184_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 20 - 228
Target Start/End: Complemental strand, 44034577 - 44034364
Alignment:
| Q |
20 |
aatgatgccaacaaatccatatttctatgaaggtaggtagcta--tatatt-----gatgatttaagtgagtttgatttggtttgtagaaatttgagatt |
112 |
Q |
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| T |
44034577 |
aatgatgccaacaaatccat--ttctatgaaggtaggtaggtagctatattatgatgatgatttaagtgagtttgatttggtttgtagaaatttgagatt |
44034480 |
T |
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| Q |
113 |
agaggatgtgtatttataccagaatggattgtttacacatataggagaataaacatctgaaaaagaataaaccttaaagttgtgccataaatggattccc |
212 |
Q |
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| T |
44034479 |
agaggatgtgtatttataccagaatggattgtttacacatataggagaataaacatctgaaaaagaataaaccttaaagttgtgccataaatggattccc |
44034380 |
T |
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| Q |
213 |
ttaacctgcacaggtt |
228 |
Q |
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|||||||||||||||| |
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| T |
44034379 |
ttaacctgcacaggtt |
44034364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 236 - 309
Target Start/End: Complemental strand, 34240071 - 34239998
Alignment:
| Q |
236 |
ttcactgtcaaagctcttaagatatcaacttcaacaaccagaagacgtaggttgagttgctcagcctcggcttc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34240071 |
ttcactgtcaaagctcttaagatatcaacttcaacaaccagaagacgtaggttgagttgctcagcctcggcttc |
34239998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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