View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5184_low_3 (Length: 398)
Name: NF5184_low_3
Description: NF5184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5184_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 12 - 382
Target Start/End: Original strand, 42834694 - 42835064
Alignment:
| Q |
12 |
atgaactgcggagtaagtcacatgaaactcatcaattgcaaggtcagcttaaagtggcactggaaaatatggctaaatcagaattggagctggtttcaga |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42834694 |
atgaactgcggagtaagtcacatgaaactcatcaattgcaaggtcagcttaaagtggcactggaaaatatggctaaatcagaattggagctggtttcaga |
42834793 |
T |
|
| Q |
112 |
gagaaagaagaatcaaatgctaggagatttggttacagtgtatgaggataatgaaactaaccataagcaagatgtgcaaaaattgaactctgaaatgctt |
211 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
42834794 |
gagaaagaagagtcaaatgctaggagatttggttacagtgtatgaggataatgaaactaaacataagcaagatgtgcaaaaattgaactcggaaatgctt |
42834893 |
T |
|
| Q |
212 |
gatttgcaagctaagttctctttggagaaagatgaactgaattttgatattgcaagtttgtcaaaaatgaaaatacaattgacctctaaactagagtatt |
311 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42834894 |
gatttgcaagctaagttctctttggagaaagatgaactgaattttgatattgcaagtttgtcaaaaatgaaaatacaattgacctctaaactagagtatt |
42834993 |
T |
|
| Q |
312 |
gtgagtctataaacaaggaattagaaaacaaattacgtaaatatgaagctgaaaacttgaaacaagagatg |
382 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42834994 |
gtgagtctataaacaaggaattagaaaacaaattacgtaaatatgaagctgaaaacttgaaacaagagatg |
42835064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 173 - 378
Target Start/End: Original strand, 42843706 - 42843911
Alignment:
| Q |
173 |
cataagcaagatgtgcaaaaattgaactctgaaatgcttgatttgcaagctaagttctctttggagaaagatgaactgaattttgatattgcaagtttgt |
272 |
Q |
| |
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|||||| |||| ||||||||||||| ||| |||||| | ||| ||| |||||||||||| ||||||| | | ||||||| | ||||| ||||||||| |
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| T |
42843706 |
cataagaaagaggtgcaaaaattgatgtctaaaatgcataattggcagactaagttctcttctgagaaaggtaagctgaattctaatattacaagtttgt |
42843805 |
T |
|
| Q |
273 |
caaaaatgaaaatacaattgacctctaaactagagtattgtgagtctataaacaaggaattagaaaacaaattacgtaaatatgaagctgaaaacttgaa |
372 |
Q |
| |
|
|||| |||||||||||||||||||||||| | ||| |||||||||||| |||||||||||| |||||||||||| | | |||||||||||||| ||||| |
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| T |
42843806 |
caaacatgaaaatacaattgacctctaaattggaggattgtgagtctagaaacaaggaattggaaaacaaattaagacagtatgaagctgaaaaattgaa |
42843905 |
T |
|
| Q |
373 |
acaaga |
378 |
Q |
| |
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|||||| |
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| T |
42843906 |
acaaga |
42843911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 42819548 - 42819650
Alignment:
| Q |
8 |
agagatgaactgcggagtaagtcacatgaaactcatcaattgcaaggtcagcttaaagtggcactggaaaatatggctaaatcagaattggagctggttt |
107 |
Q |
| |
|
||||| ||||| ||||||||||| ||| ||| |||||||| ||||||||||||||||||||| |||||||||||||| |||| |||||||| | |||| |
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| T |
42819548 |
agagaggaacttgggagtaagtcatctgagacttatcaattggaaggtcagcttaaagtggcacaggaaaatatggctatatcaaaattggagttagttt |
42819647 |
T |
|
| Q |
108 |
cag |
110 |
Q |
| |
|
||| |
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|
| T |
42819648 |
cag |
42819650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 42819689 - 42819734
Alignment:
| Q |
161 |
aatgaaactaaccataagcaagatgtgcaaaaattgaactctgaaa |
206 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |||| |
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|
| T |
42819689 |
aatgaaactaaccataaccaagatgtgcaaaaattgaactcggaaa |
42819734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 100
Target Start/End: Original strand, 42843576 - 42843654
Alignment:
| Q |
22 |
gagtaagtcacatgaaactcatcaattgcaaggtcagcttaaagtggcactggaaaatatggctaaatcagaattggag |
100 |
Q |
| |
|
||||||||||||||| |||| |||||||||| |||||||| ||| |||| | ||||| ||||||| |||||||||| |
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|
| T |
42843576 |
gagtaagtcacatgatactcgtcaattgcaaagtcagcttgaagcagcacaaaacaatattgctaaattagaattggag |
42843654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 173 - 373
Target Start/End: Complemental strand, 7363898 - 7363698
Alignment:
| Q |
173 |
cataagcaagatgtgcaaaaattgaactctgaaatgcttgatttgcaagctaagttctctttggagaaagatgaactgaattttgatattgcaagtttgt |
272 |
Q |
| |
|
|||||| |||| ||||||||||||| |||||||||| | ||| ||| |||||||||||| ||||||| || |||||||| |||||||| |||||| |
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| T |
7363898 |
cataagaaagaggtgcaaaaattgatgtctgaaatgcataattggcagactaagttctcttctgagaaaggggagttgaattttaatattgcatgtttgt |
7363799 |
T |
|
| Q |
273 |
caaaaatgaaaatacaattgacctctaaactagagtattgtgagtctataaacaaggaattagaaaacaaattacgtaaatatgaagctgaaaacttgaa |
372 |
Q |
| |
|
|||| |||||||||||||||||||||||| | ||| |||||||||||| |||||||||||| |||||||||||| | |||||||||||||||| ||||| |
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| T |
7363798 |
caaacatgaaaatacaattgacctctaaattggaggattgtgagtctagaaacaaggaattggaaaacaaattaggacaatatgaagctgaaaaattgaa |
7363699 |
T |
|
| Q |
373 |
a |
373 |
Q |
| |
|
| |
|
|
| T |
7363698 |
a |
7363698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 7364018 - 7363950
Alignment:
| Q |
32 |
catgaaactcatcaattgcaaggtcagcttaaagtggcactggaaaatatggctaaatcagaattggag |
100 |
Q |
| |
|
||||| ||||||| ||||||| |||||||||||| |||||| ||||||| ||||||| |||||||||| |
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| T |
7364018 |
catgatactcatctattgcaaagtcagcttaaagcggcactaaaaaatattgctaaattagaattggag |
7363950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 186 - 366
Target Start/End: Original strand, 12622306 - 12622489
Alignment:
| Q |
186 |
tgcaaaaattgaactctgaaatgcttgatttgcaagctaagttctctttggagaaagatgaactgaattt----tgatattgcaagtttgtcaaaaatga |
281 |
Q |
| |
|
||||||||||||||||| | ||| |||||||| | |||||||||||||||||||||||||| || || || ||||||| | ||| |||||| |
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|
| T |
12622306 |
tgcaaaaattgaactctcacatgtttgatttggaggctaagttctctttggagaaagatgagctaaagaacaaatggacttgcaagat-gtctgaaatga |
12622404 |
T |
|
| Q |
282 |
aaatacaattgacctctaaactagagtattgtgagtctataaacaaggaattagaaaacaaattacgtaaatatgaagctgaaaa |
366 |
Q |
| |
|
||| |||||||||||||||||| ||| | |||||||||| ||||| |||||||||||||||||| | |||||||||||||||| |
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|
| T |
12622405 |
aaaaacaattgacctctaaactggaggactgtgagtctagaaacagtgaattagaaaacaaattaaggcaatatgaagctgaaaa |
12622489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 276 - 378
Target Start/End: Original strand, 12628325 - 12628427
Alignment:
| Q |
276 |
aaatgaaaatacaattgacctctaaactagagtattgtgagtctataaacaaggaattagaaaacaaattacgtaaatatgaagctgaaaacttgaaaca |
375 |
Q |
| |
|
|||||||||||||||||| ||||||| | || ||| |||||||| ||||| |||||||||||||||||| | |||||||||||||||| ||||||| |
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| T |
12628325 |
aaatgaaaatacaattgatctctaaattggatgattatgagtctagaaacagtgaattagaaaacaaattaaggcaatatgaagctgaaaagatgaaaca |
12628424 |
T |
|
| Q |
376 |
aga |
378 |
Q |
| |
|
||| |
|
|
| T |
12628425 |
aga |
12628427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 30924357 - 30924245
Alignment:
| Q |
185 |
gtgcaaaaattgaactctgaaatgcttgatttgcaagctaagttctctttggagaaagatgaactgaattttgatattgcaagtttgtcaaaaatgaaaa |
284 |
Q |
| |
|
||||||||| |||| |||||||| |||| |||| || |||| ||||| ||||||||| || || ||| |||||||||||| |||||| |||| |||| |
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|
| T |
30924357 |
gtgcaaaaactgaaggatgaaatgcatgatgtgcaggcacagttttcttttgagaaagatcaattgcattctgatattgcaagcttgtcagaaataaaaa |
30924258 |
T |
|
| Q |
285 |
tacaattgacctc |
297 |
Q |
| |
|
||| |||||||| |
|
|
| T |
30924257 |
cacagttgacctc |
30924245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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