View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5184_low_6 (Length: 320)

Name: NF5184_low_6
Description: NF5184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5184_low_6
NF5184_low_6
[»] chr3 (25 HSPs)
chr3 (3-245)||(22530202-22530445)
chr3 (3-245)||(29549216-29549459)
chr3 (38-239)||(6921069-6921270)
chr3 (240-310)||(17208536-17208606)
chr3 (240-290)||(6156722-6156772)
chr3 (240-302)||(14442187-14442249)
chr3 (240-290)||(2841496-2841546)
chr3 (240-290)||(14520458-14520508)
chr3 (240-283)||(3527154-3527197)
chr3 (240-285)||(22841274-22841319)
chr3 (240-284)||(14641544-14641588)
chr3 (240-280)||(54875474-54875514)
chr3 (240-290)||(5215659-5215709)
chr3 (240-285)||(12917301-12917346)
chr3 (240-281)||(14152398-14152439)
chr3 (240-285)||(45803326-45803371)
chr3 (240-284)||(6159417-6159461)
chr3 (250-290)||(13185917-13185957)
chr3 (250-290)||(19568198-19568238)
chr3 (240-284)||(29907651-29907695)
chr3 (240-284)||(29948817-29948861)
chr3 (240-284)||(29997971-29998015)
chr3 (250-290)||(40808018-40808058)
chr3 (250-290)||(40812855-40812895)
chr3 (250-290)||(44274440-44274480)
[»] chr4 (16 HSPs)
chr4 (38-233)||(54874533-54874728)
chr4 (67-233)||(33096113-33096279)
chr4 (239-287)||(9622500-9622548)
chr4 (240-290)||(14631147-14631197)
chr4 (240-290)||(16296950-16297000)
chr4 (240-284)||(10273395-10273439)
chr4 (240-283)||(55583208-55583251)
chr4 (240-294)||(13847213-13847267)
chr4 (29-110)||(13154250-13154330)
chr4 (240-284)||(9639022-9639066)
chr4 (240-280)||(12424290-12424330)
chr4 (240-281)||(26446219-26446260)
chr4 (250-290)||(15115244-15115284)
chr4 (246-286)||(15239810-15239850)
chr4 (250-290)||(19434549-19434589)
chr4 (240-284)||(25513863-25513907)
[»] scaffold0231 (1 HSPs)
scaffold0231 (240-319)||(17482-17561)
[»] chr5 (8 HSPs)
chr5 (240-319)||(18744886-18744965)
chr5 (250-319)||(6551251-6551320)
chr5 (250-319)||(21617889-21617958)
chr5 (240-284)||(32607312-32607356)
chr5 (240-285)||(16063763-16063808)
chr5 (250-303)||(20469153-20469206)
chr5 (240-284)||(21398640-21398684)
chr5 (240-280)||(23199207-23199247)
[»] chr8 (14 HSPs)
chr8 (240-309)||(21399729-21399798)
chr8 (240-309)||(21794222-21794291)
chr8 (250-319)||(45469180-45469249)
chr8 (250-304)||(6101729-6101783)
chr8 (240-284)||(22208281-22208325)
chr8 (240-284)||(22345176-22345220)
chr8 (240-284)||(22356836-22356880)
chr8 (250-302)||(36727016-36727068)
chr8 (240-290)||(18816285-18816335)
chr8 (250-310)||(23899957-23900017)
chr8 (240-285)||(22610262-22610307)
chr8 (240-281)||(36732411-36732452)
chr8 (240-280)||(18834434-18834474)
chr8 (240-276)||(22483798-22483834)
[»] chr7 (27 HSPs)
chr7 (250-319)||(48807286-48807355)
chr7 (250-319)||(14218856-14218925)
chr7 (240-290)||(708419-708469)
chr7 (240-290)||(15575639-15575689)
chr7 (240-290)||(18874655-18874705)
chr7 (240-290)||(20252172-20252222)
chr7 (241-287)||(47095465-47095511)
chr7 (250-319)||(16078352-16078421)
chr7 (240-284)||(58409-58453)
chr7 (240-284)||(38299760-38299804)
chr7 (240-290)||(3287756-3287806)
chr7 (242-284)||(13744506-13744548)
chr7 (240-285)||(18570659-18570704)
chr7 (240-285)||(33556100-33556145)
chr7 (240-284)||(19195623-19195667)
chr7 (240-280)||(25943279-25943319)
chr7 (240-291)||(8488083-8488134)
chr7 (240-291)||(8513742-8513793)
chr7 (240-287)||(36300634-36300681)
chr7 (240-302)||(15720791-15720853)
chr7 (67-116)||(16541658-16541707)
chr7 (67-116)||(16623955-16624004)
chr7 (240-281)||(43745668-43745709)
chr7 (240-284)||(8930761-8930805)
chr7 (240-284)||(13315078-13315122)
chr7 (250-290)||(20586374-20586414)
chr7 (240-280)||(43276744-43276784)
[»] chr2 (11 HSPs)
chr2 (250-319)||(3539859-3539928)
chr2 (240-290)||(21315466-21315516)
chr2 (240-290)||(21335256-21335306)
chr2 (240-284)||(23801508-23801552)
chr2 (240-281)||(23610638-23610679)
chr2 (32-213)||(24733970-24734151)
chr2 (262-302)||(28652530-28652570)
chr2 (262-319)||(18387704-18387761)
chr2 (240-284)||(149497-149541)
chr2 (240-284)||(21369305-21369349)
chr2 (250-290)||(24516208-24516248)
[»] scaffold0207 (1 HSPs)
scaffold0207 (250-310)||(13362-13422)
[»] scaffold0004 (2 HSPs)
scaffold0004 (240-319)||(111372-111451)
scaffold0004 (240-284)||(75949-75993)
[»] chr6 (9 HSPs)
chr6 (269-319)||(23501713-23501763)
chr6 (240-284)||(10446229-10446273)
chr6 (240-281)||(21683074-21683115)
chr6 (241-284)||(19825482-19825525)
chr6 (240-302)||(18982584-18982646)
chr6 (240-282)||(29045283-29045325)
chr6 (250-290)||(15890702-15890742)
chr6 (240-284)||(23658101-23658145)
chr6 (270-302)||(25601308-25601340)
[»] scaffold0411 (1 HSPs)
scaffold0411 (262-307)||(13390-13435)
[»] scaffold0056 (2 HSPs)
scaffold0056 (250-319)||(67143-67212)
scaffold0056 (240-281)||(18287-18328)
[»] chr1 (16 HSPs)
chr1 (250-319)||(13302924-13302993)
chr1 (240-290)||(50544884-50544934)
chr1 (250-305)||(21239024-21239079)
chr1 (240-285)||(34392780-34392825)
chr1 (240-284)||(8306618-8306662)
chr1 (240-284)||(35895111-35895155)
chr1 (240-284)||(38056668-38056712)
chr1 (240-284)||(45499554-45499598)
chr1 (246-285)||(7703140-7703179)
chr1 (240-282)||(17901792-17901834)
chr1 (240-285)||(20588650-20588695)
chr1 (240-285)||(20593188-20593233)
chr1 (250-290)||(7051912-7051952)
chr1 (240-280)||(22145666-22145706)
chr1 (250-302)||(24723329-24723381)
chr1 (240-284)||(28476730-28476774)
[»] scaffold1186 (1 HSPs)
scaffold1186 (240-290)||(2032-2082)
[»] scaffold0005 (1 HSPs)
scaffold0005 (240-290)||(186186-186236)
[»] scaffold0026 (1 HSPs)
scaffold0026 (262-319)||(146757-146814)
[»] scaffold0676 (1 HSPs)
scaffold0676 (240-284)||(2893-2937)
[»] scaffold0220 (1 HSPs)
scaffold0220 (240-284)||(13961-14005)
[»] scaffold0594 (1 HSPs)
scaffold0594 (240-290)||(2259-2309)
[»] scaffold0108 (1 HSPs)
scaffold0108 (240-302)||(6430-6492)
[»] scaffold0149 (1 HSPs)
scaffold0149 (250-291)||(21633-21674)
[»] scaffold0139 (1 HSPs)
scaffold0139 (240-281)||(23546-23587)
[»] scaffold0048 (1 HSPs)
scaffold0048 (242-287)||(68719-68764)
[»] scaffold0878 (1 HSPs)
scaffold0878 (240-284)||(3418-3462)
[»] scaffold0853 (1 HSPs)
scaffold0853 (240-280)||(2454-2494)
[»] scaffold0431 (1 HSPs)
scaffold0431 (240-280)||(5645-5685)
[»] scaffold0328 (1 HSPs)
scaffold0328 (240-284)||(18636-18680)
[»] scaffold0174 (2 HSPs)
scaffold0174 (240-284)||(19868-19912)
scaffold0174 (240-284)||(5466-5510)
[»] scaffold0061 (2 HSPs)
scaffold0061 (240-284)||(14582-14626)
scaffold0061 (240-284)||(23640-23684)
[»] scaffold0031 (1 HSPs)
scaffold0031 (240-284)||(127339-127383)
[»] scaffold0098 (1 HSPs)
scaffold0098 (240-290)||(40119-40169)
[»] scaffold0205 (1 HSPs)
scaffold0205 (242-287)||(5609-5653)
[»] scaffold0086 (1 HSPs)
scaffold0086 (240-285)||(35181-35226)
[»] scaffold0037 (1 HSPs)
scaffold0037 (250-303)||(112943-112996)
[»] scaffold1941 (1 HSPs)
scaffold1941 (250-290)||(160-200)
[»] scaffold0802 (1 HSPs)
scaffold0802 (250-290)||(4699-4739)
[»] scaffold0555 (1 HSPs)
scaffold0555 (240-284)||(8742-8786)
[»] scaffold0414 (1 HSPs)
scaffold0414 (240-280)||(11160-11200)
[»] scaffold0379 (1 HSPs)
scaffold0379 (240-280)||(10959-10999)
[»] scaffold0241 (1 HSPs)
scaffold0241 (250-290)||(3204-3244)
[»] scaffold0148 (1 HSPs)
scaffold0148 (240-284)||(8856-8900)
[»] scaffold0028 (1 HSPs)
scaffold0028 (262-302)||(3030-3070)


Alignment Details
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 3 - 245
Target Start/End: Complemental strand, 22530445 - 22530202
Alignment:
Q  3 actccaccacaccaaaac-caccgtcgcacctcccaccaaccctcgacctcacttctcttccccgtcaccctctttattttttcttcccgcacctgacaa 101  Q
    |||||||||||||||||  |||| || ||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||     
T  22530445 actccaccacaccaaaaaacaccctcacacctcccaccaatcctcgacctcacttcccttccccgttaccctctttattttttcttcccacacctgacag 22530346  T
Q  102 aacatcaaacctattttaaatatcctcttgaaagtttacccccaacatctttcccacacctttaacatcatccgacatagccttactacttccatgaaga 201  Q
    |||||||||||||||  |||||||| |||| || |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  22530345 aacatcaaacctattagaaatatccccttggaaatttacccccaacttctttcccatacctttaacatcatccgacatagccttactacttccatgaaga 22530246  T
Q  202 accaaccaattcgaccagtcgttattgacagaagattgacaacc 245  Q
    ||||||||||| |||||||||||||||| |||||||||| ||||    
T  22530245 accaaccaatttgaccagtcgttattgagagaagattgagaacc 22530202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 3 - 245
Target Start/End: Original strand, 29549216 - 29549459
Alignment:
Q  3 actccaccacaccaaaaccaccgtcg-cacctcccaccaaccctcgacctcacttctcttccccgtcaccctctttattttttcttcccgcacctgacaa 101  Q
    |||| ||||||||||| ||||| ||  ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29549216 actctaccacaccaaacccaccctccacacctcccaccaaccctcggcctcacttctcttccccatcaccctctttattttttcttcccgcacctgacaa 29549315  T
Q  102 aacatcaaacctattttaaatatcctcttgaaagtttacccccaacatctttcccacacctttaacatcatccgacatagccttactacttccatgaaga 201  Q
     |||| ||||||| |||   ||||| ||||||| || |||||||| ||||||||||  ||||||||||||||||| ||||||||||||||||||||||||    
T  29549316 tacattaaacctactttgtgtatccccttgaaaattcacccccaatatctttcccattcctttaacatcatccgaaatagccttactacttccatgaaga 29549415  T
Q  202 accaaccaattcgaccagtcgttattgacagaagattgacaacc 245  Q
    |||||||||||||||||||| ||||| | ||| |||||| ||||    
T  29549416 accaaccaattcgaccagtcattattaatagatgattgagaacc 29549459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 38 - 239
Target Start/End: Complemental strand, 6921270 - 6921069
Alignment:
Q  38 ccaaccctcgacctcacttctcttccccgtcaccctctttattttttcttcccgcacctgacaaaacatcaaacctattttaaatatcctcttgaaagtt 137  Q
    |||||||||||||| |  ||||| | || |||||||||||||||||||| || || |||||||| |||||||||||||||| | ||||| ||||||| ||    
T  6921270 ccaaccctcgaccttaactctctccaccatcaccctctttattttttctaccagctcctgacaacacatcaaacctattttgattatccccttgaaaatt 6921171  T
Q  138 tacccccaacatctttcccacacctttaacatcatccgacatagccttactacttccatgaagaaccaaccaattcgaccagtcgttattgacagaagat 237  Q
     |||| || || ||| ||||  ||  ||||||||||||| | |||||| ||| | |||||||| || ||||||||||||||||| ||||| ||||| |||    
T  6921170 caccctcaccaacttacccatccccctaacatcatccgataaagccttgctattaccatgaagtactaaccaattcgaccagtcattattaacagatgat 6921071  T
Q  238 tg 239  Q
    ||    
T  6921070 tg 6921069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 240 - 310
Target Start/End: Original strand, 17208536 - 17208606
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattgatcgattgaaaggttctcttctctg 310  Q
    ||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17208536 acaactcattattagagaaagctagtcccacccttaccttagattgatcgattgaaaggttctcttctctg 17208606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 6156722 - 6156772
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattgatcga 290  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  6156722 acaacccattattagagaaagctagtcccacccttaccttagattgatcga 6156772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 302
Target Start/End: Original strand, 14442187 - 14442249
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattgatcgattgaaaggttct 302  Q
    |||||||||||||| | ||||||||||| ||||||||||||||||||| ||| ||||||||||    
T  14442187 acaacccattattacagaaagctagtcccacccttaccttagattgattgatcgaaaggttct 14442249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 2841546 - 2841496
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattgatcga 290  Q
    |||||||||||||||| ||||||||||  ||||||||||||||||||||||    
T  2841546 acaacccattattagagaaagctagtcacacccttaccttagattgatcga 2841496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 14520458 - 14520508
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattgatcga 290  Q
    |||||||||||||| | ||||||||||| ||||||||||||||||||||||    
T  14520458 acaacccattattaaagaaagctagtcccacccttaccttagattgatcga 14520508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 283
Target Start/End: Complemental strand, 3527197 - 3527154
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagat 283  Q
    |||||||||||||||| ||||||||||| |||||||||||||||    
T  3527197 acaacccattattagagaaagctagtcccacccttaccttagat 3527154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 285
Target Start/End: Complemental strand, 22841319 - 22841274
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattg 285  Q
    |||||||||||||||| ||||||||||| |||||||| ||||||||    
T  22841319 acaacccattattagagaaagctagtcccacccttacattagattg 22841274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 14641588 - 14641544
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagatt 284  Q
    |||||||||||||||| ||||||| ||| ||||||||||||||||    
T  14641588 acaacccattattagagaaagctaatcccacccttaccttagatt 14641544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 54875514 - 54875474
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttacctta 280  Q
    |||||||||||||||| ||||||||||| ||||||||||||    
T  54875514 acaacccattattagagaaagctagtcccacccttacctta 54875474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 5215659 - 5215709
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattgatcga 290  Q
    ||||| |||||||||| ||||||||| | |||||||||||| |||||||||    
T  5215659 acaactcattattagagaaagctagtgccacccttaccttatattgatcga 5215709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 285
Target Start/End: Complemental strand, 12917346 - 12917301
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattg 285  Q
    |||||||||||||||| |||| |||||| ||||||| |||||||||    
T  12917346 acaacccattattagagaaagttagtcccacccttatcttagattg 12917301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 14152439 - 14152398
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttag 281  Q
    ||||| |||||||||| ||||||||||| |||||||||||||    
T  14152439 acaactcattattagagaaagctagtcccacccttaccttag 14152398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 285
Target Start/End: Complemental strand, 45803371 - 45803326
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattg 285  Q
    |||||||||||||||| ||||||||||| ||||| || ||||||||    
T  45803371 acaacccattattagagaaagctagtcccaccctaactttagattg 45803326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 6159417 - 6159461
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagatt 284  Q
    |||||||||||||||| ||||| ||||  ||||||||||||||||    
T  6159417 acaacccattattagagaaagcgagtctcacccttaccttagatt 6159461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 13185917 - 13185957
Alignment:
Q  250 attagaaaaagctagtccgacccttaccttagattgatcga 290  Q
    |||||| |||| |||||| ||||||||||||||||||||||    
T  13185917 attagagaaagttagtcccacccttaccttagattgatcga 13185957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 19568238 - 19568198
Alignment:
Q  250 attagaaaaagctagtccgacccttaccttagattgatcga 290  Q
    |||||| |||| |||||| ||||||||||||||||||||||    
T  19568238 attagagaaagttagtcccacccttaccttagattgatcga 19568198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 29907651 - 29907695
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagatt 284  Q
    |||||||| ||||| | ||||||||||| ||||||||||||||||    
T  29907651 acaacccaatattaaagaaagctagtcccacccttaccttagatt 29907695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 29948817 - 29948861
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagatt 284  Q
    |||||||| ||||| | ||||||||||| ||||||||||||||||    
T  29948817 acaacccaatattaaagaaagctagtcccacccttaccttagatt 29948861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 29997971 - 29998015
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagatt 284  Q
    |||||||| ||||| | ||||||||||| ||||||||||||||||    
T  29997971 acaacccaatattaaagaaagctagtcccacccttaccttagatt 29998015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 40808018 - 40808058
Alignment:
Q  250 attagaaaaagctagtccgacccttaccttagattgatcga 290  Q
    |||||| |||| |||||| ||||||||||||||||||||||    
T  40808018 attagagaaagttagtcccacccttaccttagattgatcga 40808058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 40812855 - 40812895
Alignment:
Q  250 attagaaaaagctagtccgacccttaccttagattgatcga 290  Q
    |||||| |||| |||||| ||||||||||||||||||||||    
T  40812855 attagagaaagttagtcccacccttaccttagattgatcga 40812895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 44274440 - 44274480
Alignment:
Q  250 attagaaaaagctagtccgacccttaccttagattgatcga 290  Q
    |||||| |||| |||||| ||||||||||||||||||||||    
T  44274440 attagagaaagttagtcccacccttaccttagattgatcga 44274480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 38 - 233
Target Start/End: Original strand, 54874533 - 54874728
Alignment:
Q  38 ccaaccctcgacctcacttctcttccccgtcaccctctttattttttcttcccgcacctgacaaaacatcaaacctattttaaatatcctcttgaaagtt 137  Q
    |||||||||| ||| || ||||| | || ||| |||||||||||||||||||  |||||||||| |||||||||||||||| ||||||| ||||||| ||    
T  54874533 ccaaccctcggccttacctctctccaccatcaacctctttattttttcttccaacacctgacaacacatcaaacctattttgaatatccccttgaaaatt 54874632  T
Q  138 tacccccaacatctttcccacacctttaacatcatccgacatagccttactacttccatgaagaaccaaccaattcgaccagtcgttattgacaga 233  Q
     |||||||  | ||||||||  ||  ||||||||||||| | |||||| ||| | |||||||| || |||||| |||||||||||| ||| |||||    
T  54874633 cacccccactaactttcccatccccctaacatcatccgataaagccttgctattaccatgaagtactaaccaactcgaccagtcgtaattaacaga 54874728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 67 - 233
Target Start/End: Complemental strand, 33096279 - 33096113
Alignment:
Q  67 tcaccctctttattttttcttcccgcacctgacaaaacatcaaacctattttaaatatcctcttgaaagtttacccccaacatctttcccacacctttaa 166  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||  ||| |   ||||| ||||||| || | ||||| || |||||||| | |  |||    
T  33096279 tcaccctctttattttttcttcccgcacctgacaacacatcgaactgattattcttatccccttgaaaattcaaccccaccacctttcccaaatccctaa 33096180  T
Q  167 catcatccgacatagccttactacttccatgaagaaccaaccaattcgaccagtcgttattgacaga 233  Q
    | ||| | |||||| ||| || ||||||||||||| |||||||||||  |||||| ||||| |||||    
T  33096179 cgtcagctgacataacctcaccacttccatgaagagccaaccaattcatccagtcattattaacaga 33096113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 239 - 287
Target Start/End: Original strand, 9622500 - 9622548
Alignment:
Q  239 gacaacccattattagaaaaagctagtccgacccttaccttagattgat 287  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  9622500 gacaacccattattagagaaagctagtcccacccttaccttagattgat 9622548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 14631147 - 14631197
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattgatcga 290  Q
    |||||||||||||||| ||||||||||  ||||||||||||||||||||||    
T  14631147 acaacccattattagagaaagctagtctcacccttaccttagattgatcga 14631197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 16296950 - 16297000
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattgatcga 290  Q
    ||||| |||||||||| ||||||||||| ||||||||||||||||||||||    
T  16296950 acaactcattattagagaaagctagtcccacccttaccttagattgatcga 16297000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 10273395 - 10273439
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagatt 284  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  10273395 acaacccattattagagaaagctagtcccacccttaccttagatt 10273439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 283
Target Start/End: Original strand, 55583208 - 55583251
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagat 283  Q
    |||||||||||||||| ||||||||||| |||||||||||||||    
T  55583208 acaacccattattagagaaagctagtcccacccttaccttagat 55583251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 13847213 - 13847267
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattgatcgattga 294  Q
    |||||||||||||||| ||||||||||  ||||||||||||| || |||||||||    
T  13847213 acaacccattattagagaaagctagtctcacccttaccttaggttaatcgattga 13847267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 13154330 - 13154250
Alignment:
Q  29 cacctcccaccaaccctcgacctcacttctcttccccgtcaccctctttattttttcttcccgcacctgacaaaacatcaaa 110  Q
    |||||| |||||||||| | ||| ||||| ||| ||| || ||||||||||||||||||||| | |||||||| ||||||||    
T  13154330 cacctcacaccaacccttggcct-acttccctttcccatctccctctttattttttcttcccacccctgacaacacatcaaa 13154250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 9639022 - 9639066
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagatt 284  Q
    ||||| |||||||||| ||||||||||| ||||||||||||||||    
T  9639022 acaactcattattagagaaagctagtcccacccttaccttagatt 9639066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 12424330 - 12424290
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttacctta 280  Q
    |||||||||||||||| ||||||||||| ||||||||||||    
T  12424330 acaacccattattagagaaagctagtcccacccttacctta 12424290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 26446219 - 26446260
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttag 281  Q
    |||||||||||||||| ||||||||||| |||||||| ||||    
T  26446219 acaacccattattagagaaagctagtcctacccttactttag 26446260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 15115244 - 15115284
Alignment:
Q  250 attagaaaaagctagtccgacccttaccttagattgatcga 290  Q
    |||||| |||| |||||| ||||||||||||||||||||||    
T  15115244 attagagaaagttagtcccacccttaccttagattgatcga 15115284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 286
Target Start/End: Complemental strand, 15239850 - 15239810
Alignment:
Q  246 cattattagaaaaagctagtccgacccttaccttagattga 286  Q
    |||||||||| ||||||||||  ||||||||||||||||||    
T  15239850 cattattagagaaagctagtctcacccttaccttagattga 15239810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 19434589 - 19434549
Alignment:
Q  250 attagaaaaagctagtccgacccttaccttagattgatcga 290  Q
    |||||| |||| |||||| ||||||||||||||||||||||    
T  19434589 attagagaaagttagtcccacccttaccttagattgatcga 19434549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 25513863 - 25513907
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagatt 284  Q
    ||||| |||||||||| ||||||||||| ||| ||||||||||||    
T  25513863 acaactcattattagagaaagctagtcccaccattaccttagatt 25513907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 240 - 319
Target Start/End: Complemental strand, 17561 - 17482
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattgatcgattgaaaggttctcttctctgctcctcctc 319  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  17561 acaatccattattagaaaaagctagtccgacccttaccttagattgatcgattgaaaggttctcttctctggttctcctc 17482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 240 - 319
Target Start/End: Original strand, 18744886 - 18744965
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattgatcgattgaaaggttctcttctctgctcctcctc 319  Q
    |||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| |||||||| | ||||||    
T  18744886 acaacccattattagagaaagttagtcccacccttaccttagattgatcgattgaaaggttcacttctctggttctcctc 18744965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 6551320 - 6551251
Alignment:
Q  250 attagaaaaagctagtccgacccttaccttagattgatcgattgaaaggttctcttctctgctcctcctc 319  Q
    |||||| |||| |||||  |||||||||||||||||||||||||||||||| ||||||||| | ||||||    
T  6551320 attagagaaagttagtctcacccttaccttagattgatcgattgaaaggttatcttctctggttctcctc 6551251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 21617958 - 21617889
Alignment:
Q  250 attagaaaaagctagtccgacccttaccttagattgatcgattgaaaggttctcttctctgctcctcctc 319  Q
    |||||| |||| |||||| |||||||||||||||| |||||| |||||||||||||||||| | ||||||    
T  21617958 attagagaaagttagtcccacccttaccttagatttatcgatcgaaaggttctcttctctggttctcctc 21617889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 32607356 - 32607312
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagatt 284  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  32607356 acaacccattattagagaaagctagtcccacccttaccttagatt 32607312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 285
Target Start/End: Original strand, 16063763 - 16063808
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattg 285  Q
    |||||||||||||||| |||| |||||| |||||||||||||||||    
T  16063763 acaacccattattagagaaaggtagtcccacccttaccttagattg 16063808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 303
Target Start/End: Complemental strand, 20469206 - 20469153
Alignment:
Q  250 attagaaaaagctagtccgacccttaccttagattgatcgattgaaaggttctc 303  Q
    |||||| |||| |||||| ||||||||||||||||||||||| ||||| |||||    
T  20469206 attagagaaagttagtcccacccttaccttagattgatcgatcgaaagcttctc 20469153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 21398684 - 21398640
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagatt 284  Q
    |||||||||||||||| ||||||| ||| ||||||||||||||||    
T  21398684 acaacccattattagagaaagctaatcccacccttaccttagatt 21398640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 23199247 - 23199207
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttacctta 280  Q
    |||||||||||||||| ||||||||||| ||||||||||||    
T  23199247 acaacccattattagagaaagctagtcccacccttacctta 23199207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 240 - 309
Target Start/End: Original strand, 21399729 - 21399798
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattgatcgattgaaaggttctcttctct 309  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||| | ||||||||||||||||||    
T  21399729 acaacccattattagagaaagctagtcccacccttaccttagattgatcaaatgaaaggttctcttctct 21399798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 240 - 309
Target Start/End: Original strand, 21794222 - 21794291
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattgatcgattgaaaggttctcttctct 309  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||| | ||||||||||||||||||    
T  21794222 acaacccattattagagaaagctagtcccacccttaccttagattgatcaaatgaaaggttctcttctct 21794291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 45469249 - 45469180
Alignment:
Q  250 attagaaaaagctagtccgacccttaccttagattgatcgattgaaaggttctcttctctgctcctcctc 319  Q
    |||||| |||| |||||  |||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  45469249 attagagaaagttagtctcacccttaccttagattgatcgattgaaaggttctcttctctggttctcctc 45469180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 250 - 304
Target Start/End: Complemental strand, 6101783 - 6101729
Alignment:
Q  250 attagaaaaagctagtccgacccttaccttagattgatcgattgaaaggttctct 304  Q
    |||||| |||| |||||| ||| ||||||||||||||||||||||||||||||||    
T  6101783 attagagaaagttagtcccacctttaccttagattgatcgattgaaaggttctct 6101729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 22208281 - 22208325
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagatt 284  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  22208281 acaacccattattagagaaagctagtcccacccttaccttagatt 22208325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 22345176 - 22345220
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagatt 284  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  22345176 acaacccattattagagaaagctagtcccacccttaccttagatt 22345220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 22356836 - 22356880
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagatt 284  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  22356836 acaacccattattagagaaagctagtcccacccttaccttagatt 22356880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 250 - 302
Target Start/End: Complemental strand, 36727068 - 36727016
Alignment:
Q  250 attagaaaaagctagtccgacccttaccttagattgatcgattgaaaggttct 302  Q
    |||||| |||| |||||  ||||||||||||||||||||||||||||||||||    
T  36727068 attagagaaagttagtctcacccttaccttagattgatcgattgaaaggttct 36727016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 18816335 - 18816285
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattgatcga 290  Q
    |||||||||| ||||| ||||||||||| |||||||||||| |||||||||    
T  18816335 acaacccatttttagagaaagctagtcccacccttaccttatattgatcga 18816285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 310
Target Start/End: Complemental strand, 23900017 - 23899957
Alignment:
Q  250 attagaaaaagctagtccgacccttaccttagattgatcgattgaaaggttctcttctctg 310  Q
    |||||| |||| |||||  ||||||||||||||||||||||| ||||| ||||| ||||||    
T  23900017 attagagaaagttagtcacacccttaccttagattgatcgatcgaaagcttctcctctctg 23899957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 285
Target Start/End: Complemental strand, 22610307 - 22610262
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattg 285  Q
    ||||| |||||||||| |||| |||||| |||||||||||||||||    
T  22610307 acaactcattattagagaaagttagtcccacccttaccttagattg 22610262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 36732452 - 36732411
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttag 281  Q
    |||||||||||||||| ||||||||||  |||||||||||||    
T  36732452 acaacccattattagagaaagctagtcacacccttaccttag 36732411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 18834434 - 18834474
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttacctta 280  Q
    |||| ||||||||||| ||||||||||| ||||||||||||    
T  18834434 acaatccattattagagaaagctagtcccacccttacctta 18834474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 276
Target Start/End: Original strand, 22483798 - 22483834
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttac 276  Q
    |||||||||||||||| ||||||||||| ||||||||    
T  22483798 acaacccattattagagaaagctagtcccacccttac 22483834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 48807355 - 48807286
Alignment:
Q  250 attagaaaaagctagtccgacccttaccttagattgatcgattgaaaggttctcttctctgctcctcctc 319  Q
    |||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  48807355 attagagaaagttagtcccacccttaccttagattgatcgattgaaaggttctcttctctggttctcctc 48807286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 14218925 - 14218856
Alignment:
Q  250 attagaaaaagctagtccgacccttaccttagattgatcgattgaaaggttctcttctctgctcctcctc 319  Q
    |||||| |||| |||||  |||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  14218925 attagagaaagttagtctcacccttaccttagattgatcgattgaaaggttctcttctctgattctcctc 14218856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 708469 - 708419
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattgatcga 290  Q
    |||||||||||||||| ||||||||||| |||| |||||||||||||||||    
T  708469 acaacccattattagagaaagctagtcccacccctaccttagattgatcga 708419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 15575689 - 15575639
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattgatcga 290  Q
    |||||||||||||||| ||||||||||| |||| |||||||||||||||||    
T  15575689 acaacccattattagagaaagctagtcccacccctaccttagattgatcga 15575639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 18874705 - 18874655
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattgatcga 290  Q
    |||||||||||||||| ||||||||||  ||||||||||||||||||||||    
T  18874705 acaacccattattagagaaagctagtctcacccttaccttagattgatcga 18874655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 20252222 - 20252172
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattgatcga 290  Q
    ||||| |||||||||| ||||||||||| ||||||||||||||||||||||    
T  20252222 acaactcattattagagaaagctagtcctacccttaccttagattgatcga 20252172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 241 - 287
Target Start/End: Original strand, 47095465 - 47095511
Alignment:
Q  241 caacccattattagaaaaagctagtccgacccttaccttagattgat 287  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||    
T  47095465 caacccattattagagaaagctagtcccacccttaccttagattgat 47095511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 16078352 - 16078421
Alignment:
Q  250 attagaaaaagctagtccgacccttaccttagattgatcgattgaaaggttctcttctctgctcctcctc 319  Q
    |||||| |||| |||||| ||||||||||||  |||| ||||||||||||||||||||||| | ||||||    
T  16078352 attagagaaagttagtcccacccttaccttatcttgaccgattgaaaggttctcttctctggttctcctc 16078421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 58453 - 58409
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagatt 284  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  58453 acaacccattattagagaaagctagtcccacccttaccttagatt 58409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 38299760 - 38299804
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagatt 284  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  38299760 acaacccattattagagaaagctagtcccacccttaccttagatt 38299804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 3287756 - 3287806
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattgatcga 290  Q
    |||||| ||||||||| ||||||||||  ||||||||||||||||||||||    
T  3287756 acaacctattattagagaaagctagtctcacccttaccttagattgatcga 3287806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 284
Target Start/End: Complemental strand, 13744548 - 13744506
Alignment:
Q  242 aacccattattagaaaaagctagtccgacccttaccttagatt 284  Q
    |||||||||||||| ||||||||||| ||||||||||||||||    
T  13744548 aacccattattagagaaagctagtcccacccttaccttagatt 13744506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 285
Target Start/End: Original strand, 18570659 - 18570704
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattg 285  Q
    |||||||||||||||| ||||||||||  |||||||||||||||||    
T  18570659 acaacccattattagagaaagctagtctcacccttaccttagattg 18570704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 285
Target Start/End: Complemental strand, 33556145 - 33556100
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattg 285  Q
    |||||||||||||||| ||||||||||| ||||||| |||||||||    
T  33556145 acaacccattattagagaaagctagtcccacccttatcttagattg 33556100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 19195623 - 19195667
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagatt 284  Q
    ||||| |||||||||| ||||||||||| ||||||||||||||||    
T  19195623 acaactcattattagagaaagctagtcccacccttaccttagatt 19195667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 25943279 - 25943319
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttacctta 280  Q
    |||||||||||||||| ||||||||||| ||||||||||||    
T  25943279 acaacccattattagagaaagctagtcccacccttacctta 25943319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 291
Target Start/End: Complemental strand, 8488134 - 8488083
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattgatcgat 291  Q
    |||||||||||||||| |||| |||||| ||||||||||||| || ||||||    
T  8488134 acaacccattattagagaaagttagtcccacccttaccttaggttaatcgat 8488083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 291
Target Start/End: Complemental strand, 8513793 - 8513742
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattgatcgat 291  Q
    |||||||||||||||| |||| |||||| ||||||||||||| || ||||||    
T  8513793 acaacccattattagagaaagttagtcccacccttaccttaggttaatcgat 8513742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 36300681 - 36300634
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattgat 287  Q
    |||||||||||||||| ||||||||||  ||| |||||||||||||||    
T  36300681 acaacccattattagagaaagctagtctcacctttaccttagattgat 36300634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 302
Target Start/End: Original strand, 15720791 - 15720853
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattgatcgattgaaaggttct 302  Q
    |||||||||||| ||| ||||||||||| ||| |||||||| |||||| ||| ||| ||||||    
T  15720791 acaacccattatgagagaaagctagtcccacctttaccttaaattgattgatcgaatggttct 15720853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 16541707 - 16541658
Alignment:
Q  67 tcaccctctttattttttcttcccgcacctgacaaaacatcaaacctatt 116  Q
    |||||||| ||||||||||||||||| || ||||| ||||||||| ||||    
T  16541707 tcaccctccttattttttcttcccgctccggacaacacatcaaacatatt 16541658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 16623955 - 16624004
Alignment:
Q  67 tcaccctctttattttttcttcccgcacctgacaaaacatcaaacctatt 116  Q
    |||||||| ||||||||||||||||| || ||||| ||||||||| ||||    
T  16623955 tcaccctccttattttttcttcccgctccggacaacacatcaaacatatt 16624004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 43745668 - 43745709
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttag 281  Q
    ||||| |||||||||| ||||||||||| |||||||||||||    
T  43745668 acaactcattattagagaaagctagtcccacccttaccttag 43745709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 8930805 - 8930761
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagatt 284  Q
    |||||||||||||||| |||  |||||| ||||||||||||||||    
T  8930805 acaacccattattagagaaatgtagtcccacccttaccttagatt 8930761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 13315122 - 13315078
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagatt 284  Q
    |||||||||||||||| |||| |||||  ||||||||||||||||    
T  13315122 acaacccattattagagaaagatagtctcacccttaccttagatt 13315078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 20586374 - 20586414
Alignment:
Q  250 attagaaaaagctagtccgacccttaccttagattgatcga 290  Q
    |||||| |||| |||||| ||||||||||||||||||||||    
T  20586374 attagagaaagttagtcccacccttaccttagattgatcga 20586414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 43276784 - 43276744
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttacctta 280  Q
    |||||||||||||||| |||| |||||| ||||||||||||    
T  43276784 acaacccattattagagaaagttagtcccacccttacctta 43276744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 3539859 - 3539928
Alignment:
Q  250 attagaaaaagctagtccgacccttaccttagattgatcgattgaaaggttctcttctctgctcctcctc 319  Q
    |||||| |||| |||||| |||||||||||||||| ||||||||||||||||||||||||| | ||||||    
T  3539859 attagagaaagttagtcccacccttaccttagattcatcgattgaaaggttctcttctctggttctcctc 3539928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 21315516 - 21315466
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattgatcga 290  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  21315516 acaacccattattagagaaagctagtcccacccttaccttagattgatcga 21315466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 21335306 - 21335256
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattgatcga 290  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  21335306 acaacccattattagagaaagctagtcccacccttaccttagattgatcga 21335256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 23801508 - 23801552
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagatt 284  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  23801508 acaacccattattagagaaagctagtcccacccttaccttagatt 23801552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 23610638 - 23610679
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttag 281  Q
    |||||||||||||||| ||||||||||| |||||||||||||    
T  23610638 acaacccattattagagaaagctagtcccacccttaccttag 23610679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 213
Target Start/End: Complemental strand, 24734151 - 24733970
Alignment:
Q  32 ctcccaccaaccctcgacctcacttctcttccccgtcaccctctttattttttcttcccgcacctgacaaaacatcaaacctattttaaatatcctcttg 131  Q
    |||||| | ||||||||||| ||||| ||  ||| |||| |||| || ||||||||||||| |||||||| || |||||| |||| |   ||||| |||     
T  24734151 ctcccaaccaccctcgaccttacttccctaacccatcactctctctaatttttcttcccgctcctgacaacacttcaaacatattatgcttatccccttt 24734052  T
Q  132 aaagtttacccccaacatctttcccacacctttaacatcatccgacatagccttactacttccatgaagaaccaaccaattc 213  Q
    |||    | |||||    |||||||| ||| ||||||||||| |||||  |||| ||| | |||||||||||||||||||||    
T  24734051 aaaagacaaccccactgcctttcccatacccttaacatcatctgacatcaccttgctattaccatgaagaaccaaccaattc 24733970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 302
Target Start/End: Complemental strand, 28652570 - 28652530
Alignment:
Q  262 tagtccgacccttaccttagattgatcgattgaaaggttct 302  Q
    |||||| ||||||||||||||||||||||| ||||||||||    
T  28652570 tagtcccacccttaccttagattgatcgatcgaaaggttct 28652530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 319
Target Start/End: Complemental strand, 18387761 - 18387704
Alignment:
Q  262 tagtccgacccttaccttagattgatcgattgaaaggttctcttctctgctcctcctc 319  Q
    |||||| |||||||| |||||||||||||| ||||| ||||| |||||| | ||||||    
T  18387761 tagtcccacccttactttagattgatcgatcgaaagcttctcctctctggttctcctc 18387704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 149541 - 149497
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagatt 284  Q
    ||||| |||||||||| ||||||||| | ||||||||||||||||    
T  149541 acaactcattattagagaaagctagttccacccttaccttagatt 149497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 21369305 - 21369349
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagatt 284  Q
    |||||||||| ||||| |||||| |||| ||||||||||||||||    
T  21369305 acaacccattgttagagaaagcttgtcccacccttaccttagatt 21369349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 24516208 - 24516248
Alignment:
Q  250 attagaaaaagctagtccgacccttaccttagattgatcga 290  Q
    |||||| |||| |||||| ||||||||||||||||||||||    
T  24516208 attagagaaagttagtcccacccttaccttagattgatcga 24516248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 250 - 310
Target Start/End: Complemental strand, 13422 - 13362
Alignment:
Q  250 attagaaaaagctagtccgacccttaccttagattgatcgattgaaaggttctcttctctg 310  Q
    |||||| |||| |||||| |||||||||||||||||||||||||||||||||| |||||||    
T  13422 attagagaaagttagtcccacccttaccttagattgatcgattgaaaggttctattctctg 13362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 240 - 319
Target Start/End: Original strand, 111372 - 111451
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattgatcgattgaaaggttctcttctctgctcctcctc 319  Q
    |||||||||||||||| |||||||| || |||||||||||||||| |||||| ||||| ||||| |||||| | ||||||    
T  111372 acaacccattattagagaaagctagccccacccttaccttagattaatcgatcgaaagcttctcctctctggttctcctc 111451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 75949 - 75993
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagatt 284  Q
    ||||||||||||| || ||||||||||| ||||||||||||||||    
T  75949 acaacccattattggagaaagctagtcccacccttaccttagatt 75993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 269 - 319
Target Start/End: Original strand, 23501713 - 23501763
Alignment:
Q  269 acccttaccttagattgatcgattgaaaggttctcttctctgctcctcctc 319  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  23501713 acccttaccttagattgatcgattgaaaggttctcttctctggttctcctc 23501763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 10446229 - 10446273
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagatt 284  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  10446229 acaacccattattagagaaagctagtcccacccttaccttagatt 10446273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 21683115 - 21683074
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttag 281  Q
    |||||||||||||||| ||||||||||| |||||||||||||    
T  21683115 acaacccattattagagaaagctagtcccacccttaccttag 21683074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 284
Target Start/End: Complemental strand, 19825525 - 19825482
Alignment:
Q  241 caacccattattagaaaaagctagtccgacccttaccttagatt 284  Q
    ||||||||||||||| ||||||||||  ||||||||||||||||    
T  19825525 caacccattattagagaaagctagtctcacccttaccttagatt 19825482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 302
Target Start/End: Original strand, 18982584 - 18982646
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattgatcgattgaaaggttct 302  Q
    |||||||||||||||| |||| || ||| ||| ||||||||||||||| ||||  ||||||||    
T  18982584 acaacccattattagataaagttaatcccaccgttaccttagattgattgattacaaggttct 18982646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 29045283 - 29045325
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttaga 282  Q
    |||||||||||||||| ||||||||||  ||||||||||||||    
T  29045283 acaacccattattagagaaagctagtctcacccttaccttaga 29045325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 15890742 - 15890702
Alignment:
Q  250 attagaaaaagctagtccgacccttaccttagattgatcga 290  Q
    |||||| |||| |||||| ||||||||||||||||||||||    
T  15890742 attagagaaagttagtcccacccttaccttagattgatcga 15890702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 23658101 - 23658145
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagatt 284  Q
    |||||| ||||||||  ||||||||||| ||||||||||||||||    
T  23658101 acaacctattattagggaaagctagtcccacccttaccttagatt 23658145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 270 - 302
Target Start/End: Complemental strand, 25601340 - 25601308
Alignment:
Q  270 cccttaccttagattgatcgattgaaaggttct 302  Q
    |||||||||||||||||||||| ||||||||||    
T  25601340 cccttaccttagattgatcgatcgaaaggttct 25601308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0411 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0411
Description:

Target: scaffold0411; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 262 - 307
Target Start/End: Complemental strand, 13435 - 13390
Alignment:
Q  262 tagtccgacccttaccttagattgatcgattgaaaggttctcttct 307  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
T  13435 tagtcccacccttaccttagattgatcgattgaaaggttctcttct 13390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 67143 - 67212
Alignment:
Q  250 attagaaaaagctagtccgacccttaccttagattgatcgattgaaaggttctcttctctgctcctcctc 319  Q
    |||||| |||| |||||| ||| |||||||||||||||| ||||||||||||||||||||| | ||||||    
T  67143 attagagaaagttagtcccacctttaccttagattgatcaattgaaaggttctcttctctggttctcctc 67212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 18287 - 18328
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttag 281  Q
    |||||||||||||||| ||||||||||  |||||||||||||    
T  18287 acaacccattattagagaaagctagtcacacccttaccttag 18328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 13302924 - 13302993
Alignment:
Q  250 attagaaaaagctagtccgacccttaccttagattgatcgattgaaaggttctcttctctgctcctcctc 319  Q
    |||||| |||| |||||  |||||||||||||||||||||||||||||||||| ||||||| | ||||||    
T  13302924 attagagaaagttagtctcacccttaccttagattgatcgattgaaaggttctattctctggttctcctc 13302993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 50544884 - 50544934
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattgatcga 290  Q
    |||||||||||||||| ||||||||||  ||||||||||||||||||||||    
T  50544884 acaacccattattagagaaagctagtctcacccttaccttagattgatcga 50544934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 305
Target Start/End: Complemental strand, 21239079 - 21239024
Alignment:
Q  250 attagaaaaagctagtccgacccttaccttagattgatcgattgaaaggttctctt 305  Q
    |||||| |||| |||||| |||| ||||||||||||||||||||||||||| ||||    
T  21239079 attagagaaagttagtcccacccataccttagattgatcgattgaaaggttatctt 21239024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 285
Target Start/End: Original strand, 34392780 - 34392825
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattg 285  Q
    |||||||||||||||| ||||||||||  |||||||||||||||||    
T  34392780 acaacccattattagagaaagctagtcacacccttaccttagattg 34392825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 8306618 - 8306662
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagatt 284  Q
    |||||||||||||||| ||||||||||| || |||||||||||||    
T  8306618 acaacccattattagagaaagctagtcccactcttaccttagatt 8306662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 35895111 - 35895155
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagatt 284  Q
    |||||||||||||||| ||||||||||| |||| |||||||||||    
T  35895111 acaacccattattagataaagctagtcctacccataccttagatt 35895155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 38056712 - 38056668
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagatt 284  Q
    ||||||||||| |||| ||||||||||| ||||||||||||||||    
T  38056712 acaacccattactagagaaagctagtcccacccttaccttagatt 38056668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 45499554 - 45499598
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagatt 284  Q
    |||||||||||||||| ||||||||||  ||||||||||||||||    
T  45499554 acaacccattattagagaaagctagtctcacccttaccttagatt 45499598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 246 - 285
Target Start/End: Original strand, 7703140 - 7703179
Alignment:
Q  246 cattattagaaaaagctagtccgacccttaccttagattg 285  Q
    |||||||||| ||||||||||| |||||||||||||||||    
T  7703140 cattattagagaaagctagtcccacccttaccttagattg 7703179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 17901834 - 17901792
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttaga 282  Q
    |||||||||||||||| ||||||||||  ||||||||||||||    
T  17901834 acaacccattattagagaaagctagtctcacccttaccttaga 17901792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 285
Target Start/End: Original strand, 20588650 - 20588695
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattg 285  Q
    |||||||||||||||| ||||||| ||| |||||||||||| ||||    
T  20588650 acaacccattattagagaaagctaatcccacccttaccttaaattg 20588695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 285
Target Start/End: Original strand, 20593188 - 20593233
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattg 285  Q
    |||||||||||||||| ||||||| ||| |||||||||||| ||||    
T  20593188 acaacccattattagagaaagctaatcccacccttaccttaaattg 20593233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 7051952 - 7051912
Alignment:
Q  250 attagaaaaagctagtccgacccttaccttagattgatcga 290  Q
    |||||| |||| |||||| ||||||||||||||||||||||    
T  7051952 attagagaaagttagtcccacccttaccttagattgatcga 7051912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 22145706 - 22145666
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttacctta 280  Q
    |||||||||||||||| |||| |||||| ||||||||||||    
T  22145706 acaacccattattagagaaagttagtcccacccttacctta 22145666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 302
Target Start/End: Complemental strand, 24723381 - 24723329
Alignment:
Q  250 attagaaaaagctagtccgacccttaccttagattgatcgattgaaaggttct 302  Q
    |||||| |||| |||||| ||||||||||||||||||| ||| | ||||||||    
T  24723381 attagagaaagttagtcccacccttaccttagattgattgatcgcaaggttct 24723329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 28476774 - 28476730
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagatt 284  Q
    ||||| |||||||||| ||| ||||||| ||||||||||||||||    
T  28476774 acaactcattattagagaaatctagtcccacccttaccttagatt 28476730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1186 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold1186
Description:

Target: scaffold1186; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 2032 - 2082
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattgatcga 290  Q
    |||||||||||||||| ||||||||||  ||||||||||||||||||||||    
T  2032 acaacccattattagagaaagctagtctcacccttaccttagattgatcga 2082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 186236 - 186186
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattgatcga 290  Q
    |||||||||||||||| ||||||||||  ||||||||||||||||||||||    
T  186236 acaacccattattagagaaagctagtctcacccttaccttagattgatcga 186186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 319
Target Start/End: Original strand, 146757 - 146814
Alignment:
Q  262 tagtccgacccttaccttagattgatcgattgaaaggttctcttctctgctcctcctc 319  Q
    |||||| |||| ||||||||||||||||||||||||||||| ||||||| | ||||||    
T  146757 tagtcccacccataccttagattgatcgattgaaaggttcttttctctggttctcctc 146814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0676 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0676
Description:

Target: scaffold0676; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 2893 - 2937
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagatt 284  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  2893 acaacccattattagagaaagctagtcccacccttaccttagatt 2937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 13961 - 14005
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagatt 284  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  13961 acaacccattattagagaaagctagtcccacccttaccttagatt 14005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 2259 - 2309
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattgatcga 290  Q
    |||||||||||||| | ||||||||||| ||||||||||||||||| ||||    
T  2259 acaacccattattatagaaagctagtcccacccttaccttagattggtcga 2309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 302
Target Start/End: Original strand, 6430 - 6492
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattgatcgattgaaaggttct 302  Q
    ||||| |||||||||| ||||||||||  ||||||||||||||||||| ||| | ||||||||    
T  6430 acaactcattattagagaaagctagtcttacccttaccttagattgattgatcgcaaggttct 6492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 291
Target Start/End: Original strand, 21633 - 21674
Alignment:
Q  250 attagaaaaagctagtccgacccttaccttagattgatcgat 291  Q
    |||||| ||||||||||| |||||||||||||||||||||||    
T  21633 attagagaaagctagtcccacccttaccttagattgatcgat 21674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 23546 - 23587
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttag 281  Q
    |||||||||||||||| ||||||||||| |||||||||||||    
T  23546 acaacccattattagagaaagctagtcctacccttaccttag 23587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 68764 - 68719
Alignment:
Q  242 aacccattattagaaaaagctagtccgacccttaccttagattgat 287  Q
    |||||||||||||| |||| |||||| |||||||||||||||||||    
T  68764 aacccattattagagaaaggtagtcccacccttaccttagattgat 68719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0878
Description:

Target: scaffold0878; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 3462 - 3418
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagatt 284  Q
    ||||| |||||||||| ||||||||||| ||||||||||||||||    
T  3462 acaacgcattattagagaaagctagtcccacccttaccttagatt 3418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0853 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0853
Description:

Target: scaffold0853; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 2494 - 2454
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttacctta 280  Q
    |||||||||||||||| ||||||||||| ||||||||||||    
T  2494 acaacccattattagagaaagctagtcccacccttacctta 2454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 5645 - 5685
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttacctta 280  Q
    |||||||||||||||| ||||||||||| ||||||||||||    
T  5645 acaacccattattagagaaagctagtcccacccttacctta 5685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 18680 - 18636
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagatt 284  Q
    ||||| |||||||||| ||||||||||| ||||||||||||||||    
T  18680 acaactcattattagagaaagctagtcccacccttaccttagatt 18636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 19868 - 19912
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagatt 284  Q
    |||||||||||||||| ||| ||||||| ||||||||||||||||    
T  19868 acaacccattattagagaaatctagtcctacccttaccttagatt 19912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 5466 - 5510
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagatt 284  Q
    ||||| |||||||||| |||| |||||| ||||||||||||||||    
T  5466 acaactcattattagagaaaggtagtcccacccttaccttagatt 5510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 14626 - 14582
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagatt 284  Q
    |||||||||||||||| ||||||||||  ||||||||||||||||    
T  14626 acaacccattattagagaaagctagtctcacccttaccttagatt 14582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 23684 - 23640
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagatt 284  Q
    |||||||||||||||| ||||||||||  ||||||||||||||||    
T  23684 acaacccattattagagaaagctagtctcacccttaccttagatt 23640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 127383 - 127339
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagatt 284  Q
    |||| ||||||||||| ||||||||||| ||||||||||||||||    
T  127383 acaatccattattagagaaagctagtcccacccttaccttagatt 127339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 40119 - 40169
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattgatcga 290  Q
    |||||||||||||||| |||| |||||  | ||||||||||||||||||||    
T  40119 acaacccattattagagaaagttagtcgcatccttaccttagattgatcga 40169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 5653 - 5609
Alignment:
Q  242 aacccattattagaaaaagctagtccgacccttaccttagattgat 287  Q
    |||||||||||||| || |||||||| |||||||||||||||||||    
T  5653 aacccattattagagaa-gctagtcccacccttaccttagattgat 5609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 285
Target Start/End: Complemental strand, 35226 - 35181
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagattg 285  Q
    |||||||||||||||  ||||||||| | |||||||||||||||||    
T  35226 acaacccattattagggaaagctagtaccacccttaccttagattg 35181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 303
Target Start/End: Complemental strand, 112996 - 112943
Alignment:
Q  250 attagaaaaagctagtccgacccttaccttagattgatcgattgaaaggttctc 303  Q
    |||||| |||| |||||| ||||||| ||||||||||||||| ||||| |||||    
T  112996 attagagaaagttagtcccacccttatcttagattgatcgatcgaaagcttctc 112943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1941 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1941
Description:

Target: scaffold1941; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 160 - 200
Alignment:
Q  250 attagaaaaagctagtccgacccttaccttagattgatcga 290  Q
    |||||| |||| |||||| ||||||||||||||||||||||    
T  160 attagagaaagttagtcccacccttaccttagattgatcga 200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0802 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0802
Description:

Target: scaffold0802; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 4739 - 4699
Alignment:
Q  250 attagaaaaagctagtccgacccttaccttagattgatcga 290  Q
    |||||| |||| |||||| ||||||||||||||||||||||    
T  4739 attagagaaagttagtcccacccttaccttagattgatcga 4699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 8786 - 8742
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagatt 284  Q
    ||||||||||||||||  |||||||||  ||||||||||||||||    
T  8786 acaacccattattagagtaagctagtctcacccttaccttagatt 8742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0414 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0414
Description:

Target: scaffold0414; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 11200 - 11160
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttacctta 280  Q
    |||||||||||||||| ||||||||||| | ||||||||||    
T  11200 acaacccattattagagaaagctagtcccatccttacctta 11160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0379 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0379
Description:

Target: scaffold0379; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 10959 - 10999
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttacctta 280  Q
    |||||||||||||||| ||||||||| | ||||||||||||    
T  10959 acaacccattattagagaaagctagttccacccttacctta 10999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0241 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0241
Description:

Target: scaffold0241; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 3204 - 3244
Alignment:
Q  250 attagaaaaagctagtccgacccttaccttagattgatcga 290  Q
    |||||| |||| |||||| ||||||||||||||||||||||    
T  3204 attagagaaagttagtccaacccttaccttagattgatcga 3244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 8856 - 8900
Alignment:
Q  240 acaacccattattagaaaaagctagtccgacccttaccttagatt 284  Q
    |||| ||||||||||| ||||||||||| ||||||| ||||||||    
T  8856 acaatccattattagataaagctagtcccacccttaacttagatt 8900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 302
Target Start/End: Complemental strand, 3070 - 3030
Alignment:
Q  262 tagtccgacccttaccttagattgatcgattgaaaggttct 302  Q
    |||||| ||||||||||| ||||||||||||| ||||||||    
T  3070 tagtcccacccttaccttggattgatcgattgcaaggttct 3030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University