View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5184_low_7 (Length: 299)
Name: NF5184_low_7
Description: NF5184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5184_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 283
Target Start/End: Complemental strand, 11109985 - 11109712
Alignment:
| Q |
11 |
atcatcatgctttattatttttgtcaaggttgtggaaactacaaatcctcccaaactcatttgacatcttccttctagcgataaattaccctttgaagtg |
110 |
Q |
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| T |
11109985 |
atcatcaggctttattatttttgtcaaggttgtggaaactacaaatcctcccaaactcatttgacatcttccttctagcgataaattaacctttgaagtg |
11109886 |
T |
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| Q |
111 |
ataacacataatagatctcttgccgtagaagaaagttcaacacaaagttagccaaatatgtgttgagctcgcaaaccatctcctacccaccctaacaatg |
210 |
Q |
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|||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
11109885 |
ataacacaaaatagatctcttgccgtagaagaaacttcacgacaaagttagccaaatatgtgttgagctcgcaaaccatctcctgcccaccctaacaatg |
11109786 |
T |
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| Q |
211 |
acaacttcag-cacaaggggtgtttcaaaaaatatgacaattgacatagggaggtggcttgtataggttcttag |
283 |
Q |
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||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11109785 |
tcaacttcagccacaaggggagtttcaaaaaatatgacaattgacatagggaggtggcttgtataggttcttag |
11109712 |
T |
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