View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5184_low_8 (Length: 291)
Name: NF5184_low_8
Description: NF5184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5184_low_8 |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 24203232 - 24203497
Alignment:
| Q |
18 |
tctccatcctgtaagatctcatgagatccatgtgagggatattatcaacttgaagaagttatttgagtatgcagtcatcaccttgcaagccagtttgtaa |
117 |
Q |
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| T |
24203232 |
tctccatcctgtaagatctcatgagatccatgtgagggatattatcaactcgaagaagttatttgagtacgcagtcatcaccttgcaagccagtttgtaa |
24203331 |
T |
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| Q |
118 |
ggtttgagttagacccaacctaaattctaggtgttacctactaaactggaatatcttttcttgacttacaccgctttgaatttaatgactttgtccttga |
217 |
Q |
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| T |
24203332 |
gggctgagttagacccaacctaaattctaagtattcc-------actggaatatcttttgttgacttaaaccagtttgaatttaatgac-ttgtccttga |
24203423 |
T |
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| Q |
218 |
agtattcttcaagagtttataggttggttcttgtccttgaatttataccttacatactttttaagcattaaggt |
291 |
Q |
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| T |
24203424 |
agtattctgcaagagtttataggttggttcttgtccttgaatttataccatacatactttttaagcattaaggt |
24203497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 111 - 291
Target Start/End: Complemental strand, 29409987 - 29409797
Alignment:
| Q |
111 |
tttgtaaggtttgagttagacccaacctaaattctaggtgttacctactaaactggaatatcttttcttgacttacaccgctttgaatttaatgactt-- |
208 |
Q |
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| T |
29409987 |
tttgtaagggttgagttaggcccaccctaaattctaagagttaattgctaaactggaatatcttttattgacatacacctctttgaatttaatgacttca |
29409888 |
T |
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| Q |
209 |
-------tg-tccttgaagtattcttcaagagtttataggttggttcttgtccttgaatttataccttacatactttttaagcattaaggt |
291 |
Q |
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| T |
29409887 |
caaatcgtgttggttggaatatactgcaagagtttataggcgggttcttgtccttgaactagtaccatacatactttttaagcattaaggt |
29409797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 291
Target Start/End: Complemental strand, 27560418 - 27560376
Alignment:
| Q |
249 |
tgtccttgaatttataccttacatactttttaagcattaaggt |
291 |
Q |
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| T |
27560418 |
tgtccttgaattaataccatacatactttttaagcattaaggt |
27560376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 27560486 - 27560428
Alignment:
| Q |
150 |
gttacctactaaactggaatatcttttcttgacttacaccgctttgaatttaatgactt |
208 |
Q |
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| T |
27560486 |
gttacctactaaacttgaataccttttgttgatttacacctctttgaattgaatgactt |
27560428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 36668010 - 36667952
Alignment:
| Q |
150 |
gttacctactaaactggaatatcttttcttgacttacaccgctttgaatttaatgactt |
208 |
Q |
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| T |
36668010 |
gttacctactaaactggaatactgtttgtcgatttacacctctttgaatttaatgactt |
36667952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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