View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5185-Insertion-4 (Length: 363)

Name: NF5185-Insertion-4
Description: NF5185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5185-Insertion-4
NF5185-Insertion-4
[»] chr3 (2 HSPs)
chr3 (178-355)||(46594936-46595114)
chr3 (8-109)||(46595182-46595283)
[»] chr6 (4 HSPs)
chr6 (178-355)||(4435724-4435902)
chr6 (178-354)||(4091945-4092123)
chr6 (8-109)||(4435555-4435656)
chr6 (27-109)||(4091795-4091877)
[»] chr4 (2 HSPs)
chr4 (178-355)||(47521207-47521386)
chr4 (38-105)||(47521068-47521135)
[»] chr5 (3 HSPs)
chr5 (220-355)||(37719256-37719392)
chr5 (8-109)||(37719424-37719525)
chr5 (72-109)||(30440652-30440689)
[»] chr1 (5 HSPs)
chr1 (178-334)||(16960829-16960987)
chr1 (178-297)||(25868922-25869043)
chr1 (8-105)||(16961059-16961156)
chr1 (8-109)||(25868753-25868854)
chr1 (277-346)||(26496088-26496157)
[»] chr8 (1 HSPs)
chr8 (9-105)||(38016492-38016588)


Alignment Details
Target: chr3 (Bit Score: 171; Significance: 9e-92; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 178 - 355
Target Start/End: Complemental strand, 46595114 - 46594936
Alignment:
Q  178 aaacaatggtatttttgagaataaaa-gtggtaaaaagaacggaggctctgtttagttcaaccaaaattgttcagaatgttgaagctatgtattttgaca 276  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46595114 aaacaatggtatttttgagaataaaaagtggtaaaaagaacggaggctctgtttagttcaaccaaaattgttcagaatgttgaagctatgtattttgaca 46595015  T
Q  277 gatgcatttgtcaatgtagaatctcttttgttttaacaggttgtatatcactgtttttataatttgtttaccaatgtga 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46595014 gatgcatttgtcaatgtagaatctcttttgttttaacaggttgtatatcactgtttttataatttgtttaccaatgtga 46594936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 46595283 - 46595182
Alignment:
Q  8 gaaaaaacattgattttgctgacctaacttcatttctccaggtattcaatctatcccaatctgatgtatgctaatttgttaattttagaattaaatatct 107  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46595283 gaaaatacattgattttgctgacctaatttcatttctccaggtattcaatctatcccaatctgatgtatgctaatttgttaattttagaattaaatatct 46595184  T
Q  108 gg 109  Q
    ||    
T  46595183 gg 46595182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 178 - 355
Target Start/End: Original strand, 4435724 - 4435902
Alignment:
Q  178 aaacaatggtatttttgagaataaaa-gtggtaaaaagaacggaggctctgtttagttcaaccaaaattgttcagaatgttgaagctatgtattttgaca 276  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4435724 aaacaatggtatttttgagaataaaaagtggtaaaaagaacggagactctgtttagttcaaccaaaattgttcagaatgttgaagctatgtattttgaca 4435823  T
Q  277 gatgcatttgtcaatgtagaatctcttttgttttaacaggttgtatatcactgtttttataatttgtttaccaatgtga 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4435824 gatgcatttgtcaatgtagaatctcttttgttttaacaggttgtatatcactgtttttataatttgtttaccaatgtga 4435902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 178 - 354
Target Start/End: Original strand, 4091945 - 4092123
Alignment:
Q  178 aaacaatggtatttttgagaataaaa-gtggtaaaaagaacgg-aggctctgtttagttcaaccaaaattgttcagaatgttgaagctatgtattttgac 275  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  4091945 aaacaatggtatttttgagaataaaaagtggtaaaaagaacggcaggctctgtttaattcaaccaaaattgttaagaatgttgaagctatgtattttgac 4092044  T
Q  276 agatgcatttgtcaatgtagaatctcttttgttttaacaggttgtatatcactgtttttataatttgtttaccaatgtg 354  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4092045 aggtgcatttgtcaatgtagaatctcttttgttttaacaggttgtatatcactgtttttagaatttgtttaccaatgtg 4092123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 4435555 - 4435656
Alignment:
Q  8 gaaaaaacattgattttgctgacctaacttcatttctccaggtattcaatctatcccaatctgatgtatgctaatttgttaattttagaattaaatatct 107  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4435555 gaaaatacattgattttgctgacctaatttcatttctccaggtattcaatctatcccaatctgatgtatgctaatttgttaattttagaattaaatatct 4435654  T
Q  108 gg 109  Q
    ||    
T  4435655 gg 4435656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 27 - 109
Target Start/End: Original strand, 4091795 - 4091877
Alignment:
Q  27 tgacctaacttcatttctccaggtattcaatctatcccaatctgatgtatgctaatttgttaattttagaattaaatatctgg 109  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4091795 tgacctaattccatttctccaggtattcaatctatcccaatctgatgtatgctaatttgttaatttcagaattaaatatctgg 4091877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 136; Significance: 7e-71; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 178 - 355
Target Start/End: Original strand, 47521207 - 47521386
Alignment:
Q  178 aaacaatggtatttttgagaataaaa-gtggtaaaaagaacgg-aggctctgtttagttcaaccaaaattgttcagaatgttgaagctatgtattttgac 275  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  47521207 aaacaatggtatttttgagaataaaaagtggtaaaaagaacggcaggttctgtttaattcaaccaaaattgttaagaatgttgaagctatgtattttgac 47521306  T
Q  276 agatgcatttgtcaatgtagaatctcttttgttttaacaggttgtatatcactgtttttataatttgtttaccaatgtga 355  Q
    || ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||    
T  47521307 aggtgcatttgtcaatgtagaatctcttttgtttaaacaggttgtatatcattgtttttagaatttgtttaccaatgtga 47521386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 47521068 - 47521135
Alignment:
Q  38 catttctccaggtattcaatctatcccaatctgatgtatgctaatttgttaattttagaattaaatat 105  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  47521068 catttctccaggtattcaatctatctcaatctgatgtatgctaatttgttaattttagaatcaaatat 47521135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 220 - 355
Target Start/End: Complemental strand, 37719392 - 37719256
Alignment:
Q  220 aggctctgtttagttcaaccaaaattgttcagaatgttg-aagctatgtattttgacagatgcatttgtcaatgtagaatctcttttgttttaacaggtt 318  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37719392 aggctctgtttagttcaaccaaaattgttcagaatgttggaagctatgtattttgacagatgcatttgtcaatgtagaatctcttttgttttaacaggtt 37719293  T
Q  319 gtatatcactgtttttataatttgtttaccaatgtga 355  Q
    |||||||||||||||||||||||||||||||||||||    
T  37719292 gtatatcactgtttttataatttgtttaccaatgtga 37719256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 37719525 - 37719424
Alignment:
Q  8 gaaaaaacattgattttgctgacctaacttcatttctccaggtattcaatctatcccaatctgatgtatgctaatttgttaattttagaattaaatatct 107  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  37719525 gaaaaaacattgattttgctgacctaatttcatttctccaggtattcaatctatcccaatctgatgtatgctaatttgctaattttagaattaaatatct 37719426  T
Q  108 gg 109  Q
    ||    
T  37719425 gg 37719424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 30440689 - 30440652
Alignment:
Q  72 tgtatgctaatttgttaattttagaattaaatatctgg 109  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  30440689 tgtatgctaatttgtgaattttagaattaaatatctgg 30440652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 178 - 334
Target Start/End: Complemental strand, 16960987 - 16960829
Alignment:
Q  178 aaacaatggtatttttgagaataaaa-gtggtaaaaagaacgg-aggctctgtttagttcaaccaaaattgttcagaatgttgaagctatgtattttgac 275  Q
    |||||||||||||||||||||||||| ||||||||||||| || | |||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  16960987 aaacaatggtatttttgagaataaaaagtggtaaaaagaatggcatgctctgtttaattcaaccaaaattgttaagaatgttgaagctatgtattttgac 16960888  T
Q  276 agatgcatttgtcaatgtagaatctcttttgttttaacaggttgtatatcactgttttt 334  Q
    || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  16960887 aggtgcatttgtcaatgtagaatctcttttgttttaacaggttttatatcactgttttt 16960829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 178 - 297
Target Start/End: Original strand, 25868922 - 25869043
Alignment:
Q  178 aaacaatggtatttttgagaataaaa-gtggtaaaaagaacgg-aggctctgtttagttcaaccaaaattgttcagaatgttgaagctatgtattttgac 275  Q
    |||||||||||||||||||||||||| |||||||||||||| | |||||||||||| |||||||||||||||| |||||||||||||||||||||||||     
T  25868922 aaacaatggtatttttgagaataaaaagtggtaaaaagaactgcaggctctgtttaattcaaccaaaattgttaagaatgttgaagctatgtattttgat 25869021  T
Q  276 agatgcatttgtcaatgtagaa 297  Q
    ||||||||||||||||||||||    
T  25869022 agatgcatttgtcaatgtagaa 25869043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 16961156 - 16961059
Alignment:
Q  8 gaaaaaacattgattttgctgacctaacttcatttctccaggtattcaatctatcccaatctgatgtatgctaatttgttaattttagaattaaatat 105  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  16961156 gaaaaaacattgattttgctgacctaattccatttctccaggtattcaatctatcacaatctgatgtatgctaatttgttaattttagaattaaatat 16961059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 25868753 - 25868854
Alignment:
Q  8 gaaaaaacattgattttgctgacctaacttcatttctccaggtattcaatctatcccaatctgatgtatgctaatttgttaattttagaattaaatatct 107  Q
    ||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25868753 gaaaaaacattgattttgctgacctaattccatttatccaggtattcaatctatcccaatctgatgtatgctaatttattaattttagaattaaatatct 25868852  T
Q  108 gg 109  Q
    ||    
T  25868853 gg 25868854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 277 - 346
Target Start/End: Original strand, 26496088 - 26496157
Alignment:
Q  277 gatgcatttgtcaatgtagaatctcttttgttttaacaggttgtatatcactgtttttataatttgttta 346  Q
    |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26496088 gatgcatttgttgctgtagaatctcttttgttttaacaggttgtatatcactgtttttagaatttgttta 26496157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 38016588 - 38016492
Alignment:
Q  9 aaaaaacattgattttgctgacctaacttcatttctccaggtattcaatctatcccaatctgatgtatgctaatttgttaattttagaattaaatat 105  Q
    |||| |||||||||||||| |||||| | ||||||||||||||||||||||||| |||| || | ||||||||||||||| ||||| ||||||||||    
T  38016588 aaaatacattgattttgctcacctaattccatttctccaggtattcaatctatctcaatatgttttatgctaatttgttagttttaaaattaaatat 38016492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University