View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5186-Insertion-10 (Length: 196)
Name: NF5186-Insertion-10
Description: NF5186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5186-Insertion-10 |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 2e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 2e-75
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 45535100 - 45534914
Alignment:
| Q |
8 |
aaatgtatagttgcgcacaccaagttactcagtgaatctggttaggaatgggtgctaaatgtattagcatgtataaagcaacaacatatacacagagaca |
107 |
Q |
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| T |
45535100 |
aaatgtatagttgcgcacaccaagttactcattgaatctggttaggactgggtgctaagtgtattagcatgtataaagcaacaacatatacatagagaca |
45535001 |
T |
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| Q |
108 |
ctaacatgtgaacaccaataattattttgaaaaataatataattcaattgtcggtgtcgaatataggaacgtattagacaccaaaca |
194 |
Q |
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| T |
45535000 |
ctaacatgtgaacactgataattattttaaaaaataatataatttaattgtcggtgtcgaatacggggacgtattagacaccaaaca |
45534914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 12 - 121
Target Start/End: Original strand, 44338407 - 44338518
Alignment:
| Q |
12 |
gtatagttgcgcacaccaagttactcagtgaatc-tggttaggaa-tgggtgctaaatgtattagcatgtataaagcaacaacatatacacagagacact |
109 |
Q |
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| T |
44338407 |
gtatatttgcgcacaccaagttagtcaatgaaacatggttaggaaatggctattaaatgtattagcatgtataaaacgtcgacatatacccagagacatt |
44338506 |
T |
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| Q |
110 |
aacatgtgaaca |
121 |
Q |
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| T |
44338507 |
aacatgtgaaca |
44338518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 8 - 155
Target Start/End: Original strand, 24564363 - 24564510
Alignment:
| Q |
8 |
aaatgtatagttgcgcacaccaagttactcagtgaatctggttaggaatgggtgctaaatgtattagcatgtataaagcaacaacatatacacagagaca |
107 |
Q |
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| T |
24564363 |
aaatgtatatttgcgcagaccaagttactcaatgaatatggtttggaatgggtattaaatgtattggcatgtataaagcatcggaatatacacagagaca |
24564462 |
T |
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| Q |
108 |
ctaacatgtgaacaccaataattattttgaaaaataatataattcaat |
155 |
Q |
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| T |
24564463 |
ctaacatctgaacaccgacaattattttaaaaaataatataattcaat |
24564510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 9e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 9e-38
Query Start/End: Original strand, 8 - 155
Target Start/End: Original strand, 9800590 - 9800736
Alignment:
| Q |
8 |
aaatgtatagttgcgcacaccaagttactcagtgaatctggttaggaatgggtgctaaatgtattagcatgtataaagcaacaacatatacacagagaca |
107 |
Q |
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||||||||| ||| || |||||||||||||| ||||| |||||| |||||||| ||||||||||||||||||||||||| || |||||||| ||||||| |
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| T |
9800590 |
aaatgtatatttgtgcccaccaagttactcaatgaatatggttatgaatgggtattaaatgtattagcatgtataaagcatcagcatatacatagagaca |
9800689 |
T |
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| Q |
108 |
ctaacatgtgaacaccaataattattttgaaaaataatataattcaat |
155 |
Q |
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| T |
9800690 |
ctaacatctgaataccgataatta-tttaaaaaataatataattcaat |
9800736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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