View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5186-Insertion-2 (Length: 563)
Name: NF5186-Insertion-2
Description: NF5186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5186-Insertion-2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 8 - 561
Target Start/End: Original strand, 39128284 - 39128840
Alignment:
| Q |
8 |
tgttttttgaaatttcctaaacaaagcttcttcttttcaacattatcatcatgtattctagctaaaagaaccacatttcttatcttttacctatatattt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39128284 |
tgttttttgaaatttcctaaacaaagcttcttcttttcaacattatcataatgtattctagctaaaagaatcacatttcttatcttttacctatatattt |
39128383 |
T |
|
| Q |
108 |
tgttaatggtagtagtaaatgtttgttttatttttgttagtgagagggtttcaaaaccattttatgctttgtgtcaatacaatagtatcactgtgtttat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
39128384 |
tgttaatggtagtagtaaatgtttgttttatttttgttagtgagagggtttcaaaaccattttatgctctgtgtcaatacaatagtatcactttgtttat |
39128483 |
T |
|
| Q |
208 |
gtttgannnnnnnnnnnnnnnnacccttgttttgtaattactacatgtctatttccatggtgtttatcattttgaactgtgtttatgctttgtgtcaaca |
307 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39128484 |
gtttgattttttgtttttttt-acccttgttttgtaattactacatgtctatttccatggtgtttatcattttgaactgtgtttatgctttgtgtcaaca |
39128582 |
T |
|
| Q |
308 |
caatagtatcactgtgtttatgtttcattttgtttgaaatttccttaacaaggtttcatttttgtgtggtctgagtgaatgccatagttgagaaattgat |
407 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39128583 |
caatagtatcactgtgtttatgtttgattttgtttgaaatttccttaacaaggtttcatttttgtgtggtctgagtgaatgccatagttgagaaattgat |
39128682 |
T |
|
| Q |
408 |
tttaagggttttgcttgtttcaactatgttcaatttgaaaccaccaaataaacttatcaacattg----ttactactaggtgtttatgtttattcttatt |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
39128683 |
tttaagggttttgcttgtttcaactatgttcaatttgaaaccaccaaataaacttatcaacattgttacttactaccaggtgtttatgtttattcttatt |
39128782 |
T |
|
| Q |
504 |
ttcttttatctgttggcaatgtatatatgttgttagagcggtggattctgttttcact |
561 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39128783 |
ttcttttatctgttggcaatgtatatatgttgttagagcggtggattctgttttcact |
39128840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University