View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5186-Insertion-3 (Length: 483)

Name: NF5186-Insertion-3
Description: NF5186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5186-Insertion-3
NF5186-Insertion-3
[»] chr1 (1 HSPs)
chr1 (8-483)||(43348743-43349218)


Alignment Details
Target: chr1 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 8 - 483
Target Start/End: Original strand, 43348743 - 43349218
Alignment:
Q  8 aaagggtcaaaggaatagcttttcatctatacaaaatggaaagaaaacaagaaaagaattagaagatgaagaggttccaatggatttattgtgggaggtt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43348743 aaagggtcaaaggaatagcttttcatctatacaaaatggaaagaaaacaagaaaagaattagaagatgaagaggttccaatggatttattgtgggaggtt 43348842  T
Q  108 ttcaatgaggatgtggttgagtatagatccttaacaattgataataccaacaatgctcttattcaaaccaagaacaagcctagtatgttggtgatgttga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43348843 ttcaatgaggatgtggttgagtatagatccttaacaattgataataccaacaatgctcttattcaaaccaagaacaagcctagtatgttggtgatgttga 43348942  T
Q  208 aggttttaaagaaacttttttccatcaacaattctcatggtaaaccaagaagaagaatactctaattctatcattatgttggtgatcatgctattggctt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43348943 aggttttaaagaaacttttttccatcaacaattctcatggtaaaccaagaagaagaatactctaattctatcattatgttggtgatcatgctattggctt 43349042  T
Q  308 ttgggtaagcgtgcttattcatgctttcttttattttagaagaagaaaattgtcttgttaattatatataattagtagtatagaattgtttttattctat 407  Q
    ||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43349043 ttgggtaagagtgcttattcatgttttcttttattttataagaagaaaattgtcttgttaattatatataattagtagtatagaattgtttttattctat 43349142  T
Q  408 gaggagcttatatgtaaaagtaaattaaaattatagagaaactttctttgattcatgcaagttcaatatatatgta 483  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43349143 gaggagcttatatgtaaaagtaaattaaaattatagagaaactttctttgattcatgcaagttcaatatatatgta 43349218  T

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