View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5186-Insertion-4 (Length: 392)

Name: NF5186-Insertion-4
Description: NF5186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5186-Insertion-4
NF5186-Insertion-4
[»] chr1 (4 HSPs)
chr1 (8-392)||(2148917-2149301)
chr1 (137-384)||(2160908-2161155)
chr1 (194-303)||(41687779-41687888)
chr1 (194-308)||(19542561-19542675)
[»] chr4 (3 HSPs)
chr4 (179-306)||(2877111-2877238)
chr4 (178-288)||(2897389-2897499)
chr4 (178-303)||(2886877-2887002)
[»] chr2 (4 HSPs)
chr2 (179-315)||(44223284-44223420)
chr2 (179-315)||(44234106-44234242)
chr2 (179-315)||(44211122-44211258)
chr2 (196-303)||(43457689-43457796)
[»] chr7 (5 HSPs)
chr7 (190-309)||(42171942-42172061)
chr7 (190-354)||(42154051-42154215)
chr7 (190-308)||(42133150-42133268)
chr7 (190-314)||(42142288-42142412)
chr7 (179-336)||(39547586-39547743)
[»] chr8 (1 HSPs)
chr8 (230-303)||(4501195-4501268)
[»] chr3 (1 HSPs)
chr3 (162-267)||(49773049-49773154)


Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 8 - 392
Target Start/End: Complemental strand, 2149301 - 2148917
Alignment:
Q  8 gatatcagatattctgttgacatgccacaggtaacttacttttatttttaagatcacagtggggaaaaatggaatggagcatcagaattaaaatcgtcct 107  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2149301 gatatcacatattctgttgacatgccacaggtaacttacttttatttttaagatcacagtggggaaaaatggaatggagcatcagaattaaaatcgtcct 2149202  T
Q  108 aacattttaagtctgttatgttgattatatagggaatgaaaaatcaaggagttactgaggatcgtctcgaacttttgaagggtgttagtggtgcttttag 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2149201 aacattttaagtctgttatgttgattatatagggaatgaaaaatcaaggagttactgaggatcgtctcgaacttttgaagggtgttagtggtgcttttag 2149102  T
Q  208 acctggagtactaacaactttgatgggtgtaagtggtgctggaaagactactttaatggacgttttagctggaagaaaaactagtggatacattgatgga 307  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||    
T  2149101 acctggagtactaacagctttgatgggtgtaagtggtgctggaaagactactttaatggatgttttagctggaataaaaactagtggatacattgaagga 2149002  T
Q  308 aacatcaaagtatccggctatcaaaagaatcaaaaatcattcgctcgcatatcgggatattgtgaacaattcgatattcactcac 392  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2149001 aacatcaaagtatccggctatcaaaagaatcaaaaatcattcgctcgcatatcgggatattgtgaacaattcgatattcactcac 2148917  T

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Target: chr1; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 137 - 384
Target Start/End: Complemental strand, 2161155 - 2160908
Alignment:
Q  137 tagggaatgaaaaatcaaggagttactgaggatcgtctcgaacttttgaagggtgttagtggtgcttttagacctggagtactaacaactttgatgggtg 236  Q
    |||| ||||||||||||||||||| | ||||||||||||||||||||||||||| | | ||| || ||||| ||||||||||||||  ||||||||||||    
T  2161155 taggaaatgaaaaatcaaggagtttccgaggatcgtctcgaacttttgaagggtatcaatggcgcctttaggcctggagtactaactgctttgatgggtg 2161056  T
Q  237 taagtggtgctggaaagactactttaatggacgttttagctggaagaaaaactagtggatacattgatggaaacatcaaagtatccggctatcaaaagaa 336  Q
    |||||||||| |||||||||||| ||||||| |||||||||||||| |||||| ||||||| |||||||||||||||| | |||||||||||| ||||||    
T  2161055 taagtggtgccggaaagactactctaatggatgttttagctggaaggaaaactggtggatatattgatggaaacatcacaatatccggctatccaaagaa 2160956  T
Q  337 tcaaaaatcattcgctcgcatatcgggatattgtgaacaattcgatat 384  Q
    ||||||| |||| |||||||||||||||||||| || ||||| |||||    
T  2160955 tcaaaaaacatttgctcgcatatcgggatattgcgagcaatttgatat 2160908  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 194 - 303
Target Start/End: Complemental strand, 41687888 - 41687779
Alignment:
Q  194 agtggtgcttttagacctggagtactaacaactttgatgggtgtaagtggtgctggaaagactactttaatggacgttttagctggaagaaaaactagtg 293  Q
    ||||||||||| || ||||||||||||||  | ||  | ||||||| |||||||||||| || ||  ||||||| ||| | ||||||||||||||| |||    
T  41687888 agtggtgctttcaggcctggagtactaacggcattagttggtgtaactggtgctggaaaaaccacactaatggatgttcttgctggaagaaaaactggtg 41687789  T
Q  294 gatacattga 303  Q
    | || |||||    
T  41687788 gttatattga 41687779  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 308
Target Start/End: Original strand, 19542561 - 19542675
Alignment:
Q  194 agtggtgcttttagacctggagtactaacaactttgatgggtgtaagtggtgctggaaagactactttaatggacgttttagctggaagaaaaactagtg 293  Q
    |||||||||||||| |||||| |  ||||| | ||  | |||||||||||||||||||| || ||||| ||||| ||  |  | ||||| ||||||||||    
T  19542561 agtggtgcttttaggcctggaattttaacagcattagttggtgtaagtggtgctggaaaaaccactttgatggatgtgctttcaggaaggaaaactagtg 19542660  T
Q  294 gatacattgatggaa 308  Q
    | |||||||| ||||    
T  19542661 gttacattgaaggaa 19542675  T

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Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 179 - 306
Target Start/End: Original strand, 2877111 - 2877238
Alignment:
Q  179 cttttgaagggtgttagtggtgcttttagacctggagtactaacaactttgatgggtgtaagtggtgctggaaagactactttaatggacgttttagctg 278  Q
    ||||||||||| ||||||||||| ||||||||||| || || ||| ||||||||||||| ||||| ||||| || |||||||| ||||| || || ||||    
T  2877111 cttttgaagggagttagtggtgcatttagacctggtgttctcacagctttgatgggtgttagtggagctggtaaaactactttgatggatgtattggctg 2877210  T
Q  279 gaagaaaaactagtggatacattgatgg 306  Q
    | || ||||||||||| || ||||||||    
T  2877211 gtaggaaaactagtggttatattgatgg 2877238  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 178 - 288
Target Start/End: Complemental strand, 2897499 - 2897389
Alignment:
Q  178 acttttgaagggtgttagtggtgcttttagacctggagtactaacaactttgatgggtgtaagtggtgctggaaagactactttaatggacgttttagct 277  Q
    |||||||||||||||||||||||| ||||| ||||| || || ||| | || ||||| || ||||| ||||| || |||||||||||||| ||||| |||    
T  2897499 acttttgaagggtgttagtggtgcatttaggcctggtgttctcacagcattaatgggagttagtggagctggtaaaactactttaatggatgttttggct 2897400  T
Q  278 ggaagaaaaac 288  Q
    || ||||||||    
T  2897399 ggtagaaaaac 2897389  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 178 - 303
Target Start/End: Original strand, 2886877 - 2887002
Alignment:
Q  178 acttttgaagggtgttagtggtgcttttagacctggagtactaacaactttgatgggtgtaagtggtgctggaaagactactttaatggacgttttagct 277  Q
    |||||||||||||||||||||||| ||||| ||||| || || ||| | || ||||| || ||||| ||||| || |||||||||||||| ||||| |||    
T  2886877 acttttgaagggtgttagtggtgcatttaggcctggtgttctcacagccttaatgggagttagtggagctggtaaaactactttaatggatgttttggct 2886976  T
Q  278 ggaagaaaaactagtggatacattga 303  Q
    || || |||||| |||| || |||||    
T  2886977 ggtaggaaaactggtggttatattga 2887002  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 179 - 315
Target Start/End: Complemental strand, 44223420 - 44223284
Alignment:
Q  179 cttttgaagggtgttagtggtgcttttagacctggagtactaacaactttgatgggtgtaagtggtgctggaaagactactttaatggacgttttagctg 278  Q
    ||||||||||||||||||||||| || || || || || || ||| ||||||||||||||||||| ||||| || || ||| | ||||| ||| | ||||    
T  44223420 cttttgaagggtgttagtggtgcattcaggcccggtgttctcacagctttgatgggtgtaagtggagctggtaaaacaactctgatggatgttctggctg 44223321  T
Q  279 gaagaaaaactagtggatacattgatggaaacatcaa 315  Q
    | || |||||  ||||||| ||||||||| |||||||    
T  44223320 gtaggaaaacaggtggatatattgatggagacatcaa 44223284  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 179 - 315
Target Start/End: Complemental strand, 44234242 - 44234106
Alignment:
Q  179 cttttgaagggtgttagtggtgcttttagacctggagtactaacaactttgatgggtgtaagtggtgctggaaagactactttaatggacgttttagctg 278  Q
    |||||||||||||||||||| || || || ||||| ||||| ||  ||||||||||||||||||| ||||| || || ||| | ||||| ||| | ||||    
T  44234242 cttttgaagggtgttagtggcgcattcaggcctggtgtacttacggctttgatgggtgtaagtggagctggtaaaacaactctgatggatgttctggctg 44234143  T
Q  279 gaagaaaaactagtggatacattgatggaaacatcaa 315  Q
    | || |||||  ||||||| ||||||||| |||||||    
T  44234142 gtaggaaaacaggtggatatattgatggagacatcaa 44234106  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 179 - 315
Target Start/End: Complemental strand, 44211258 - 44211122
Alignment:
Q  179 cttttgaagggtgttagtggtgcttttagacctggagtactaacaactttgatgggtgtaagtggtgctggaaagactactttaatggacgttttagctg 278  Q
    ||||||||||||||||| ||||| || || || || || || ||| ||||||||||||||||||| ||||| || || ||| | ||||| ||| | ||||    
T  44211258 cttttgaagggtgttagcggtgcattcaggcccggtgttctcacagctttgatgggtgtaagtggagctggtaaaacaactctgatggatgttctggctg 44211159  T
Q  279 gaagaaaaactagtggatacattgatggaaacatcaa 315  Q
    | || |||||  ||||||| ||||||||| |||||||    
T  44211158 gtaggaaaacaggtggatatattgatggagacatcaa 44211122  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 303
Target Start/End: Complemental strand, 43457796 - 43457689
Alignment:
Q  196 tggtgcttttagacctggagtactaacaactttgatgggtgtaagtggtgctggaaagactactttaatggacgttttagctggaagaaaaactagtgga 295  Q
    |||||| || || |||||||| |||||  |||| ||||| || ||||| ||||||||||| ||||| ||||| |||||||||||||| || ||  ||||     
T  43457796 tggtgcattcaggcctggagttctaacggctttaatgggagttagtggagctggaaagacaactttgatggatgttttagctggaaggaagacaggtggt 43457697  T
Q  296 tacattga 303  Q
    ||||||||    
T  43457696 tacattga 43457689  T

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Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 190 - 309
Target Start/End: Complemental strand, 42172061 - 42171942
Alignment:
Q  190 tgttagtggtgcttttagacctggagtactaacaactttgatgggtgtaagtggtgctggaaagactactttaatggacgttttagctggaagaaaaact 289  Q
    ||||||||||||||||||||| ||| || ||||| |  |  | ||||| ||||||||||| ||||| ||  | ||||| || ||||||||||||||||||    
T  42172061 tgttagtggtgcttttagaccaggaatattaacagcacttgtaggtgttagtggtgctgggaagacaacactcatggatgtattagctggaagaaaaact 42171962  T
Q  290 agtggatacattgatggaaa 309  Q
     ||||||||||||| |||||    
T  42171961 ggtggatacattgaaggaaa 42171942  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 190 - 354
Target Start/End: Complemental strand, 42154215 - 42154051
Alignment:
Q  190 tgttagtggtgcttttagacctggagtactaacaactttgatgggtgtaagtggtgctggaaagactactttaatggacgttttagctggaagaaaaact 289  Q
    ||||||||||||||||||||| ||| || ||||| |  |  | ||||| ||||||||||||||||| ||  | ||||| || ||||| || ||||||||     
T  42154215 tgttagtggtgcttttagaccgggaatattaacagcacttgtaggtgttagtggtgctggaaagacaaccctcatggatgtattagccggcagaaaaaca 42154116  T
Q  290 agtggatacattgatggaaacatcaaagtatccggctatcaaaagaatcaaaaatcattcgctcg 354  Q
     ||||||||||||| ||||| |||||  ||||||| || | |||||| |||  | ||||||||||    
T  42154115 ggtggatacattgaaggaaatatcaacatatccggttaccgaaagaaccaagcaacattcgctcg 42154051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 190 - 308
Target Start/End: Complemental strand, 42133268 - 42133150
Alignment:
Q  190 tgttagtggtgcttttagacctggagtactaacaactttgatgggtgtaagtggtgctggaaagactactttaatggacgttttagctggaagaaaaact 289  Q
    ||||||||||||||| ||||| ||| || ||||| |  | |||||||| ||||||||||||||||| ||  | ||||| || ||||| |||||||||||     
T  42133268 tgttagtggtgctttcagaccaggaatattaacagcacttatgggtgtcagtggtgctggaaagacaaccctcatggatgtattagccggaagaaaaaca 42133169  T
Q  290 agtggatacattgatggaa 308  Q
     ||||||| ||||| ||||    
T  42133168 ggtggatatattgaaggaa 42133150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 190 - 314
Target Start/End: Complemental strand, 42142412 - 42142288
Alignment:
Q  190 tgttagtggtgcttttagacctggagtactaacaactttgatgggtgtaagtggtgctggaaagactactttaatggacgttttagctggaagaaaaact 289  Q
    |||||||||| |||||||||| ||| || ||||| |  |  | ||||| ||||||||||||||||| ||  ||||||| || |||||||||||||| ||     
T  42142412 tgttagtggttcttttagaccaggaatattaacagcacttgtaggtgttagtggtgctggaaagacaaccctaatggatgtattagctggaagaaagaca 42142313  T
Q  290 agtggatacattgatggaaacatca 314  Q
     |||||||||| || ||||| ||||    
T  42142312 ggtggatacatcgaaggaaatatca 42142288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 336
Target Start/End: Complemental strand, 39547743 - 39547586
Alignment:
Q  179 cttttgaagggtgttagtggtgcttttagacctggagtactaacaactttgatgggtgtaagtggtgctggaaagactactttaatggacgttttagctg 278  Q
    |||||||||||||| ||||| ||||| |||||||| || || ||  || |||||||||| | |||||| || || || ||| | ||||| ||  |  |||    
T  39547743 cttttgaagggtgtaagtggagctttcagacctggtgttctcactgctctgatgggtgtgactggtgcaggcaaaacaactctgatggatgtactttctg 39547644  T
Q  279 gaagaaaaactagtggatacattgatggaaacatcaaagtatccggctatcaaaagaa 336  Q
    | ||||||||| ||||||| |||| ||| ||||||| | |||| ||||||| ||||||    
T  39547643 gtagaaaaactggtggatatattggtgggaacatcacaatatctggctatccaaagaa 39547586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 303
Target Start/End: Original strand, 4501195 - 4501268
Alignment:
Q  230 atgggtgtaagtggtgctggaaagactactttaatggacgttttagctggaagaaaaactagtggatacattga 303  Q
    ||||| || |||||||| || ||||| ||||||||||| |||||||| |||||||| ||| |||| ||||||||    
T  4501195 atgggagttagtggtgccgggaagacaactttaatggatgttttagcaggaagaaagactggtggctacattga 4501268  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 267
Target Start/End: Original strand, 49773049 - 49773154
Alignment:
Q  162 ctgaggatcgtctcgaacttttgaagggtgttagtggtgcttttagacctggagtactaacaactttgatgggtgtaagtggtgctggaaagactacttt 261  Q
    |||| ||||| || ||||||||||  ||||||| ||| ||||||||||| ||||| || ||| || | |||||| ||||||| ||||| || || ||| |    
T  49773049 ctgaagatcgacttgaacttttgacaggtgttaatggagcttttagaccaggagttctgacagctctaatgggtataagtggagctggtaaaacaactct 49773148  T
Q  262 aatgga 267  Q
    ||||||    
T  49773149 aatgga 49773154  T

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