View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5186-Insertion-6 (Length: 181)
Name: NF5186-Insertion-6
Description: NF5186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5186-Insertion-6 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 132; Significance: 8e-69; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 8e-69
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 29115994 - 29115821
Alignment:
| Q |
8 |
aataaaccataacttgttactcaattttaattctacaaaaccatcc---atgtgtatcatttctagtttaataaaccgtaacttaattatacacttggtt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
29115994 |
aataaaccataacttgttactcaattttaattctacaaaaccatcctgcatgtttat-atttctagtttaataaaccgtaactt--tcatacacttggtt |
29115898 |
T |
|
| Q |
105 |
tcacttcatgatgcctaaatctccagtttaaaattctctcacttttctcgttaattatagaagcaattagaatcgcg |
181 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29115897 |
tcacttcatgctgcctaaatctccagtttaaaattctctcacttttctcgttaattatagaagcaattagaatcgcg |
29115821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University