View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5186_high_1 (Length: 559)

Name: NF5186_high_1
Description: NF5186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5186_high_1
NF5186_high_1
[»] chr1 (8 HSPs)
chr1 (18-554)||(29449014-29449527)
chr1 (20-86)||(29462304-29462370)
chr1 (365-434)||(29457080-29457149)
chr1 (89-157)||(29462215-29462283)
chr1 (114-188)||(29444247-29444321)
chr1 (114-188)||(29454254-29454328)
chr1 (459-506)||(29456984-29457031)
chr1 (312-364)||(29461783-29461834)
[»] chr2 (7 HSPs)
chr2 (91-188)||(9363665-9363762)
chr2 (114-188)||(12019793-12019867)
chr2 (18-73)||(9363573-9363628)
chr2 (114-188)||(11988326-11988400)
chr2 (114-184)||(12007150-12007220)
chr2 (41-89)||(9069069-9069117)
chr2 (92-192)||(9287782-9287882)
[»] chr8 (1 HSPs)
chr8 (92-188)||(41968300-41968397)
[»] chr7 (1 HSPs)
chr7 (125-189)||(45242651-45242715)


Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 18 - 554
Target Start/End: Complemental strand, 29449527 - 29449014
Alignment:
Q  18 acaccattccagaagtgagatacaaatgggtggagctacattccttatcaattcaatccttcccacaaaccactagaaacaatttgagcattcgttttca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29449527 acaccattccagaagtgagatacaaatgggtggagctacattccttatcaattcaatccttcccacaaaccactagaaacaatttgagcattcgttttca 29449428  T
Q  118 gcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatccttgtnnnnnnnncacatgaatatcatata 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||    
T  29449427 gcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatccttgtaaaaaaaacacatgaatatcatata 29449328  T
Q  218 agtaaactcaacaaattagctagtcacgtgcatgggccgaatgtccatgtatcattgctcttatcaataataacctgccacgtcatgtacctatttctgt 317  Q
    |||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29449327 agtaaactcaacaaattagctagtcac----atgggccgaatgtccatgtatcattgctcttatcaataataacctgccacgtcatgtacctatttctgt 29449232  T
Q  318 tggatctataaaacaaccttgggcacaaagggatggcattcaaagtctacagcagaaaaggattaagagtccaccttatgatattacaacataaaactta 417  Q
    |||                   |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  29449231 tgg-------------------gcacaaagggatggcattcaaagtctacagcataaaaggattaagagtccaccttatgatattacaacataaaactta 29449151  T
Q  418 atttgtagaaaaaatattcaagacatgattnnnnnnngggcgtttttgtgtgaaaatgccttgtaggtttcttttgcaagtacatatttgtgaagtgtag 517  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29449150 atttgtagaaaaaatattcaagacatgattaaaaaaagggcgtttttgtgtgaaaatgccttgtaggtttcttttgcaagtacatatttgtgaagtgtag 29449051  T
Q  518 tttcttgtattagattttgtgtagtacctttgcttct 554  Q
    |||||||||||||||||||||||||||||||||||||    
T  29449050 tttcttgtattagattttgtgtagtacctttgcttct 29449014  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 29462370 - 29462304
Alignment:
Q  20 accattccagaagtgagatacaaatgggtggagctacattccttatcaattcaatccttcccacaaa 86  Q
    |||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29462370 accatttcagaagagagatacaaatgtgtggagctacattccttatcaattcaatccttcccacaaa 29462304  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 365 - 434
Target Start/End: Complemental strand, 29457149 - 29457080
Alignment:
Q  365 tacagcagaaaaggattaagagtccaccttatgatattacaacataaaacttaatttgtagaaaaaatat 434  Q
    ||||||||||||||| ||| ||||||| |||||||||||||||||||||| ||  |||||||||||||||    
T  29457149 tacagcagaaaaggaataatagtccacattatgatattacaacataaaacataccttgtagaaaaaatat 29457080  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 89 - 157
Target Start/End: Complemental strand, 29462283 - 29462215
Alignment:
Q  89 actagaaacaatttgagcattcgttttcagcttcacatcagtggttcttctttcactcccttacaatgt 157  Q
    ||||||||||| ||||||||| | |||| ||| ||||||| |||||||||||||| |||||||||||||    
T  29462283 actagaaacaacttgagcatttggtttctgctacacatcattggttcttctttcattcccttacaatgt 29462215  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 188
Target Start/End: Complemental strand, 29444321 - 29444247
Alignment:
Q  114 ttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 188  Q
    ||||||| | |||||  |||||||| |||||||||||||||| ||  ||||||||||||| ||||||||| ||||    
T  29444321 ttcagctacgcatcaaaggttcttccttcactcccttacaatttcagtttaaatccttgggacaagaagttatcc 29444247  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 188
Target Start/End: Complemental strand, 29454328 - 29454254
Alignment:
Q  114 ttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 188  Q
    ||||||| |||||||  | |||||| |||||||| ||||||| || ||||||||||| || ||||||||||||||    
T  29454328 ttcagctacacatcaaagattcttccttcactccattacaatttcaatttaaatcctcgggacaagaagtcatcc 29454254  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 506
Target Start/End: Complemental strand, 29457031 - 29456984
Alignment:
Q  459 gtttttgtgtgaaaatgccttgtaggtttcttttgcaagtacatattt 506  Q
    |||||||||||||||| | ||||||||||||||||| |||||| ||||    
T  29457031 gtttttgtgtgaaaatactttgtaggtttcttttgcgagtacaaattt 29456984  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 364
Target Start/End: Complemental strand, 29461834 - 29461783
Alignment:
Q  312 ttctgttggatctataaaacaaccttgggcacaaagggatggcattcaaagtc 364  Q
    |||| ||||||||||||||||||||| ||||| |||| |||||| ||||||||    
T  29461834 ttctattggatctataaaacaaccttaggcac-aaggaatggcagtcaaagtc 29461783  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 91 - 188
Target Start/End: Original strand, 9363665 - 9363762
Alignment:
Q  91 tagaaacaatttgagcattcgttttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 188  Q
    ||||||||| ||||| || ||  ||||||| ||||||  |||||||||| |||||||||||||||| | |||||||||||||| ||||||||||||||    
T  9363665 tagaaacaacttgagtatccggcttcagctacacatccctggttcttctatcactcccttacaatgacaatttaaatccttgggacaagaagtcatcc 9363762  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 114 - 188
Target Start/End: Complemental strand, 12019867 - 12019793
Alignment:
Q  114 ttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 188  Q
    ||||||| |||||||  | |||||| ||||||||||||||||||| |||||||||||| | ||||||||||||||    
T  12019867 ttcagctacacatcaacgattcttccttcactcccttacaatgtcaatttaaatcctttggacaagaagtcatcc 12019793  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 9363573 - 9363628
Alignment:
Q  18 acaccattccagaagtgagatacaaatgggtggagctacattccttatcaattcaa 73  Q
    |||||| || ||||| ||||||||||||| ||||||||||||||||||||||||||    
T  9363573 acaccactcaagaagagagatacaaatggatggagctacattccttatcaattcaa 9363628  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 114 - 188
Target Start/End: Complemental strand, 11988400 - 11988326
Alignment:
Q  114 ttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 188  Q
    ||||||| |||| ||  |||||||| ||||||||||||||||||| ||||||||||||   ||||||||||||||    
T  11988400 ttcagctacacaacaaaggttcttccttcactcccttacaatgtcaatttaaatccttttgacaagaagtcatcc 11988326  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 114 - 184
Target Start/End: Complemental strand, 12007220 - 12007150
Alignment:
Q  114 ttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtc 184  Q
    ||||||| ||||| |  |||||||| ||||||||||||||| ||| ||||||||||| || ||| ||||||    
T  12007220 ttcagctacacataacaggttcttccttcactcccttacaaggtcaatttaaatcctcgggacaggaagtc 12007150  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 9069117 - 9069069
Alignment:
Q  41 aaatgggtggagctacattccttatcaattcaatccttcccacaaacca 89  Q
    ||||||||| |||| ||||| |||||||||||| | |||||||||||||    
T  9069117 aaatgggtgcagcttcattctttatcaattcaacctttcccacaaacca 9069069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 92 - 192
Target Start/End: Original strand, 9287782 - 9287882
Alignment:
Q  92 agaaacaatttgagcattcgttttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatccttg 191  Q
    |||||||| |||||||| |  |||||||| |||||||  ||| ||||  ||  ||||||||||| || ||||||||||| || |||| ||||| ||||||    
T  9287782 agaaacaacttgagcatcctgtttcagctgcacatcacaggtacttccatccatcccttacaatctcaatttaaatcctcgggacaaaaagtcgtccttg 9287881  T
Q  192 t 192  Q
    |    
T  9287882 t 9287882  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 188
Target Start/End: Complemental strand, 41968397 - 41968300
Alignment:
Q  92 agaaacaatttgagcattc-gttttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 188  Q
    |||||||| |||||||| | | |||||||| |||||||  ||| |||| |||  ||||||||||| || |||||||||||||| ||||||||||||||    
T  41968397 agaaacaacttgagcatcctggtttcagctgcacatcacaggtccttccttccatcccttacaatctcaatttaaatccttgggacaagaagtcatcc 41968300  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 125 - 189
Target Start/End: Original strand, 45242651 - 45242715
Alignment:
Q  125 atcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcct 189  Q
    |||| ||||||||| ||  ||| ||| ||||||| |||||||||| ||| |||||||||||||||    
T  45242651 atcactggttcttccttggctctctttcaatgtcaatttaaatccctggaacaagaagtcatcct 45242715  T

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