View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5186_high_10 (Length: 249)
Name: NF5186_high_10
Description: NF5186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5186_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 84 - 233
Target Start/End: Original strand, 35788398 - 35788539
Alignment:
| Q |
84 |
ttatgtctctcgattatgaattcctaagctatgcaaaagagtgttagttacaattttgagcatttttgtgcgttactaaactaatgaaacattaataaat |
183 |
Q |
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| T |
35788398 |
ttatgtccctcgattatgacttcctaagctactcaaaagaatgttagttacaattttgggcattt---------actaaactaatgaaacattaataaat |
35788488 |
T |
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| Q |
184 |
tgtaaagcataaaga-aagagacaaattacaataaaataataagtttgatt |
233 |
Q |
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| T |
35788489 |
tataaagcataaagataaaagacaaattacgataaaataataagtttgatt |
35788539 |
T |
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Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 35787872 - 35787957
Alignment:
| Q |
1 |
caagtgaacaagaaagtaaatagagagcgggtttttaggagaaaagaatatgtactttgtgatgagatgatgaaaggagatatttat |
87 |
Q |
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| T |
35787872 |
caagttaacaagaaagtaaatagagagcga-tttttaggagaaaagaacatgtactttgtgatgagatgatgaaaggagatatttat |
35787957 |
T |
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