View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5186_high_12 (Length: 245)
Name: NF5186_high_12
Description: NF5186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5186_high_12 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 133 - 234
Target Start/End: Complemental strand, 8600060 - 8599959
Alignment:
| Q |
133 |
tgcaaaaatgatccatatcttcatttccatctttccaccattcattttctaggaagaaggaaggaacaacacaatagaatcaaatcaaactaactagttc |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8600060 |
tgcaaaaatgatccatatcttcatttccatctttccaccattcattttctaggaagaaggaaagaacaacacaatagaatcaaatcaaactaactagttc |
8599961 |
T |
|
| Q |
233 |
tt |
234 |
Q |
| |
|
|| |
|
|
| T |
8599960 |
tt |
8599959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 3076400 - 3076305
Alignment:
| Q |
1 |
ccgtggttttttacttctcatattgaggagtttttcacgtaaatcatgtgtgttatttctcttgttattttacttacttctctttaattctcaatt |
96 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3076400 |
ccgtggttttttacttctcatatttaggagttttccatgtaaatcttgtgtgttatttctcttgttattttacttacttctctttaattctcaatt |
3076305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 29470936 - 29471036
Alignment:
| Q |
1 |
ccgtggttttttacttctcatattgaggagtttttcacgtaaatcatgtgtgttatttctcttgttattttacttacttctctttaattctcaattgcat |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| || ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
29470936 |
ccgtggttttttagttctcatattgaggagttttccatgtaaatcttgtgtgttttttctcttgttattttacttacttctctttaattctcaatttcat |
29471035 |
T |
|
| Q |
101 |
c |
101 |
Q |
| |
|
| |
|
|
| T |
29471036 |
c |
29471036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 3072875 - 3072818
Alignment:
| Q |
1 |
ccgtggttttttacttctcatattgaggagtttttcacgtaaatcatgtgtgttattt |
58 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
3072875 |
ccgtggttttttacttctcatattgaggagttttccacgtaaatcttgtgtgttattt |
3072818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 8564928 - 8564830
Alignment:
| Q |
4 |
tggttttttacttctcatattgaggagtttttcacgtaaatcatgtgtgtta-tttctcttgttattttacttacttctctttaattctcaattgcatc |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8564928 |
tggttttttacttctcatattgaggagttttcaacgtaaatcttgtgtgttaatttctcttgttattttacttacttctctttaattctcaatagcatc |
8564830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 101
Target Start/End: Original strand, 23043804 - 23043835
Alignment:
| Q |
70 |
ttacttacttctctttaattctcaattgcatc |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
23043804 |
ttacttacttctctttaattctcaattgcatc |
23043835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 101
Target Start/End: Original strand, 23048159 - 23048190
Alignment:
| Q |
70 |
ttacttacttctctttaattctcaattgcatc |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
23048159 |
ttacttacttctctttaattctcaattgcatc |
23048190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 15241616 - 15241524
Alignment:
| Q |
9 |
ttttacttctcatattgaggagtttttcacgtaaatcatgtgtgttatttctcttgttattttacttacttctctttaattctcaattgcatc |
101 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
15241616 |
tttttcttctcatattgaggagttttccacgtaaatcttgtgtgttatttctcttattattttacttacttctctttgattctcaattgcatc |
15241524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 15114126 - 15114220
Alignment:
| Q |
1 |
ccgtggttttttacttctcatattgaggagtttttcacgtaaatcatgtgtgttatttctcttgttattttacttacttctctttaattctcaattgcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15114126 |
ccgtggttttttacttctcatattgag------tccacgtaaatcttgtgtgttatttctcttgttattttacttacttctctttaattctcaatagcat |
15114219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University