View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5186_high_14 (Length: 243)
Name: NF5186_high_14
Description: NF5186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5186_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 54396246 - 54396471
Alignment:
| Q |
1 |
aaatataaaatgattaggattcatgtcagacgtgtctaggtggcaaatgcccaaagcatccattatgtctccatattgaccctttagaagaactttgaag |
100 |
Q |
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| T |
54396246 |
aaatataaaatgattaggattcatgtcagacgtgtctaggtggcaaatgcccaaagcatccattatgtctccatattgaccctttagaagaactttgaag |
54396345 |
T |
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| Q |
101 |
accttactccctatgtctaggtagtggcaatagtaaagagcataagggtaaggcctagggtgacaagctacccatttaggagcatagatatcctttgaga |
200 |
Q |
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| T |
54396346 |
accttactccctatgtctaggtagtggcaatagtaaagagcataagggtaaggcctagggtgacaagctacccatttaggagcatagatatcctttgaga |
54396445 |
T |
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| Q |
201 |
ttttcaaaatggtgtagttctgcaaa |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
54396446 |
ttttcaaaatggtgtagttctgcaaa |
54396471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 54381362 - 54381587
Alignment:
| Q |
1 |
aaatataaaatgattaggattcatgtcagacgtgtctaggtggcaaatgcccaaagcatccattatgtctccatattgaccctttagaagaactttgaag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
54381362 |
aaatataaaatgattaggattcatgtcagacgtgtctaggtggcaaatgcccaaagcatccatcatgtctccatattgaccccttagaagaactttgaag |
54381461 |
T |
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| Q |
101 |
accttactccctatgtctaggtagtggcaatagtaaagagcataagggtaaggcctagggtgacaagctacccatttaggagcatagatatcctttgaga |
200 |
Q |
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| T |
54381462 |
atcctactgcctatgtctaggtagtggcaatagtaaagagcataagggtaaggtctagggtgacaagctacccatttaggagcatagatatcctttgaga |
54381561 |
T |
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| Q |
201 |
ttttcaaaatggtgtagttctgcaaa |
226 |
Q |
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||| ||||||||||||||| |||||| |
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| T |
54381562 |
tttccaaaatggtgtagttttgcaaa |
54381587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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