View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5186_low_18 (Length: 239)

Name: NF5186_low_18
Description: NF5186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5186_low_18
NF5186_low_18
[»] chr4 (4 HSPs)
chr4 (18-239)||(37992683-37992904)
chr4 (17-107)||(16831164-16831254)
chr4 (17-97)||(35808569-35808649)
chr4 (20-103)||(19248852-19248935)
[»] chr8 (1 HSPs)
chr8 (17-64)||(18131194-18131241)
[»] chr5 (6 HSPs)
chr5 (17-64)||(6102831-6102878)
chr5 (17-64)||(16802030-16802077)
chr5 (18-64)||(15139231-15139277)
chr5 (17-54)||(12036371-12036408)
chr5 (17-65)||(5471080-5471128)
chr5 (17-64)||(6830270-6830318)
[»] chr6 (2 HSPs)
chr6 (17-54)||(20208076-20208113)
chr6 (17-54)||(22102099-22102136)
[»] chr7 (5 HSPs)
chr7 (17-71)||(21857663-21857717)
chr7 (17-87)||(47537405-47537475)
chr7 (17-98)||(32279718-32279799)
chr7 (26-58)||(1112231-1112263)
chr7 (17-64)||(39786515-39786563)
[»] chr3 (1 HSPs)
chr3 (18-64)||(19202398-19202444)
[»] chr1 (1 HSPs)
chr1 (17-58)||(34382696-34382737)
[»] scaffold0123 (1 HSPs)
scaffold0123 (17-64)||(17536-17584)
[»] scaffold0016 (1 HSPs)
scaffold0016 (34-98)||(82961-83024)


Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 37992904 - 37992683
Alignment:
Q  18 taattacattacttttaataaaaagttacttgttttgattgcttaactgatgtcatgaggacaccgtttagtattctccttgtattattttacacttcct 117  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  37992904 taattacattacttttaataaaaagttacttgttttgattgtttaactgatgtcatgagggcaccgtttagcattctccttgtattattttacacttcct 37992805  T
Q  118 aattatattacgatggttttatataagcattgttgccagcaactgtaagcaagtgtttttggttgagatttttcatatcactcaaattgtgatagattga 217  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37992804 aattatattaggatggttttatataagcattgttgccagcaactgtaagcaagtgtttttggttgagatttttcatatcactcaaattgtgatagattga 37992705  T
Q  218 ttacttatgccattgagaccat 239  Q
    |||||||||||||| |||||||    
T  37992704 ttacttatgccattcagaccat 37992683  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 16831164 - 16831254
Alignment:
Q  17 ataattacattacttttaataaaaagttacttgttttgattgcttaactgatgtcatgaggacaccgtttagtattctccttgtattattt 107  Q
    ||||||| | ||||||| ||||||||||| |||||||| ||||||||   ||| | | ||||||| |||||| |||||||||| |||||||    
T  16831164 ataattatactactttttataaaaagttatttgttttggttgcttaatcaatgccttaaggacactgtttagcattctccttgaattattt 16831254  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 35808569 - 35808649
Alignment:
Q  17 ataattacattacttttaataaaaagttacttgttttgattgcttaactgatgtcatgaggacaccgtttagtattctcct 97  Q
    |||||||||  |||||| |||||||||||||| ||||| |||||||||  ||| | ||||||||| |||||  ||||||||    
T  35808569 ataattacacaactttttataaaaagttacttattttggttgcttaaccaatgacttgaggacactgtttaacattctcct 35808649  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 19248935 - 19248852
Alignment:
Q  20 attacattacttttaataaaaagttacttgttttgattgcttaactgatgtcatgaggacaccgtttagtattctccttgtatt 103  Q
    ||||||| |||||| ||||||| ||| |||||||| || ||||| |  |||| |||||||||  |||| |||||||||||||||    
T  19248935 attacatcactttttataaaaaattagttgttttggttccttaattattgtcctgaggacactatttattattctccttgtatt 19248852  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 18131241 - 18131194
Alignment:
Q  17 ataattacattacttttaataaaaagttacttgttttgattgcttaac 64  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||    
T  18131241 ataattacactacttttaataaaaagttacttgttttggttgcttaac 18131194  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 6102878 - 6102831
Alignment:
Q  17 ataattacattacttttaataaaaagttacttgttttgattgcttaac 64  Q
    ||||||||| |||||||||||||||||||||| ||||| |||||||||    
T  6102878 ataattacaatacttttaataaaaagttacttattttggttgcttaac 6102831  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 16802077 - 16802030
Alignment:
Q  17 ataattacattacttttaataaaaagttacttgttttgattgcttaac 64  Q
    ||||||||||||||||| ||||||||||| |||||||| |||||||||    
T  16802077 ataattacattactttttataaaaagttatttgttttggttgcttaac 16802030  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 15139231 - 15139277
Alignment:
Q  18 taattacattacttttaataaaaagttacttgttttgattgcttaac 64  Q
    |||||||| ||||||| ||||||| |||||| |||||||||||||||    
T  15139231 taattacactactttttataaaaaattacttattttgattgcttaac 15139277  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 12036371 - 12036408
Alignment:
Q  17 ataattacattacttttaataaaaagttacttgttttg 54  Q
    ||||||||||||||||||||||||||||| || |||||    
T  12036371 ataattacattacttttaataaaaagttatttattttg 12036408  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 5471128 - 5471080
Alignment:
Q  17 ataattacattacttttaataaaaagttacttgttttgattgcttaact 65  Q
    ||||| |||||| |||| |||||||||| ||| ||||||||||||||||    
T  5471128 ataataacattattttttataaaaagtttcttattttgattgcttaact 5471080  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 6830318 - 6830270
Alignment:
Q  17 ataattacattacttttaata-aaaagttacttgttttgattgcttaac 64  Q
    ||||||||| ||||||||||| |||| |||||||||||| |||||||||    
T  6830318 ataattacactacttttaataaaaaaattacttgttttggttgcttaac 6830270  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 20208076 - 20208113
Alignment:
Q  17 ataattacattacttttaataaaaagttacttgttttg 54  Q
    |||||||||||||||||||||||||| |||||||||||    
T  20208076 ataattacattacttttaataaaaagctacttgttttg 20208113  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 22102099 - 22102136
Alignment:
Q  17 ataattacattacttttaataaaaagttacttgttttg 54  Q
    |||||||||||||||||||||||||| |||||||||||    
T  22102099 ataattacattacttttaataaaaagctacttgttttg 22102136  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 21857663 - 21857717
Alignment:
Q  17 ataattacattacttttaataaaaagttacttgttttgattgcttaactgatgtc 71  Q
    ||||||||| |||||||||||||||||||||| ||||  || ||||||| |||||    
T  21857663 ataattacactacttttaataaaaagttacttatttttgttacttaactaatgtc 21857717  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 47537475 - 47537405
Alignment:
Q  17 ataattacattacttttaataaaaagttacttgttttgattgcttaactgatgtcatgaggacaccgttta 87  Q
    |||||||||  |||||| |||||||||||| ||||||  |||||||||| ||||| | ||| |||||||||    
T  47537475 ataattacacaactttttataaaaagttacctgttttagttgcttaactaatgtcctaagggcaccgttta 47537405  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 32279718 - 32279799
Alignment:
Q  17 ataattacattacttttaataaaaagttacttgttttgattgcttaactgatgtcatgaggacaccgtttagtattctcctt 98  Q
    |||||||||||| |||||||||||||||  |||||||  |||||||||   |||| | |  ||||||||||| |||||||||    
T  32279718 ataattacattatttttaataaaaagttgattgttttagttgcttaaccattgtcttaataacaccgtttagcattctcctt 32279799  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 1112231 - 1112263
Alignment:
Q  26 ttacttttaataaaaagttacttgttttgattg 58  Q
    |||||||| ||||||||||||||||||||||||    
T  1112231 ttactttttataaaaagttacttgttttgattg 1112263  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 39786515 - 39786563
Alignment:
Q  17 ataattacattacttttaat-aaaaagttacttgttttgattgcttaac 64  Q
    ||||||||| |||||||||| ||||||||| |||||||| |||||||||    
T  39786515 ataattacactacttttaataaaaaagttatttgttttggttgcttaac 39786563  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 19202398 - 19202444
Alignment:
Q  18 taattacattacttttaataaaaagttacttgttttgattgcttaac 64  Q
    |||||||| ||||||||||||||||||| |||||||  |||||||||    
T  19202398 taattacactacttttaataaaaagttaattgttttagttgcttaac 19202444  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 34382696 - 34382737
Alignment:
Q  17 ataattacattacttttaataaaaagttacttgttttgattg 58  Q
    |||||||||  |||||| ||||||||||||||||||||||||    
T  34382696 ataattacacaactttttataaaaagttacttgttttgattg 34382737  T

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Target: scaffold0123 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 17584 - 17536
Alignment:
Q  17 ataattacattacttttaata-aaaagttacttgttttgattgcttaac 64  Q
    ||||||| ||||||||||||| |||||||| |||||||||||| |||||    
T  17584 ataattatattacttttaataaaaaagttatttgttttgattgtttaac 17536  T

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Target: scaffold0016 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 82961 - 83024
Alignment:
Q  34 aataaaaagttacttgttttgattgcttaactgatgtcatgaggacaccgtttagtattctcctt 98  Q
    ||||||||||||||||||||||||| |||||  ||||| ||||| ||| |||||  |||||||||    
T  82961 aataaaaagttacttgttttgattg-ttaaccaatgtcctgagggcactgtttaacattctcctt 83024  T

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