View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5186_low_2 (Length: 501)
Name: NF5186_low_2
Description: NF5186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5186_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 434; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 18 - 496
Target Start/End: Complemental strand, 19991803 - 19991326
Alignment:
| Q |
18 |
tatggtagcttttagaatttaatcactaattgtttctcattaagtctttcgtccacttgctatagtaattgaaatcaaggtctacaaaatattgagactc |
117 |
Q |
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| T |
19991803 |
tatggtagcttttagaatttaatcactaattgtttctcattaagtctttcgtccacttgctatagtaattgaaatcaaggtctacaaaatattgagactc |
19991704 |
T |
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| Q |
118 |
agtttcttttctgctaatttgaatatctagtatcaatgaaaatcatttaggttgctaagctcctttgttaacaagctaatgnnnnnnnngtaaagaaaga |
217 |
Q |
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| T |
19991703 |
ggtttcttttctgctaatttgaatatctagtatcaatgaaaatcatttaggttgctaagctcctttgttaacaagctaatgaaaaaaa-gtaaagaaaga |
19991605 |
T |
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| Q |
218 |
agagaggaattctttactaaaatattttagtgttatataacctttatttattgaccttttgcttaatatattctgtgtaattgcgcttgttgtcagtact |
317 |
Q |
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| T |
19991604 |
agagaggaattctttactaaaatattttagtgttatataacctttatttattgaccttttgtttaatatattccttgtaattgcgcttgttgtcagtact |
19991505 |
T |
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| Q |
318 |
atgcaaatgttcttgcagtattaggttgtgcattgcatataatgaatttttgagttactagaaagatgcttgactttgttcttagttttgtttttcctca |
417 |
Q |
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| T |
19991504 |
atgcaaatgttcttgcagtattaggttgtgcattgcatataatgaatttttgagttactagaaagatgcttgactttgttcttagttttgtttttcctca |
19991405 |
T |
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| Q |
418 |
tatgctatttgttttcccccattgaccaaattacataatcttccatataaatctcattttaccgctaccaagacctatg |
496 |
Q |
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| T |
19991404 |
tatgctatttgttttcccccattgaccaaattacataatcttccatataaatctcattttaccgctaccaagacctatg |
19991326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 350 - 410
Target Start/End: Complemental strand, 47604839 - 47604779
Alignment:
| Q |
350 |
ttgcatataatgaatttttgagttactagaaagatgcttgactttgttcttagttttgttt |
410 |
Q |
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| T |
47604839 |
ttgcttatgatgaatttttgagttactagagagatgtttgacttagttcttggttttgttt |
47604779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 350 - 410
Target Start/End: Complemental strand, 47609337 - 47609277
Alignment:
| Q |
350 |
ttgcatataatgaatttttgagttactagaaagatgcttgactttgttcttagttttgttt |
410 |
Q |
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| T |
47609337 |
ttgcttatgatgaatttttgagttactagagagatgtttgacttagttcttggttttgttt |
47609277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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