View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5186_low_3 (Length: 462)
Name: NF5186_low_3
Description: NF5186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5186_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 35787800 - 35787564
Alignment:
| Q |
1 |
ttgaagtctattaagatcaatgactaaaacatgttcaaccttaggtggtagctagcactaatgtcatgcattaattagttacctaggaattagttgtaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35787800 |
ttgaagtctattaagatcaatgactaaaacatgttcaaccttaggtggtagctagcactaatgtcatgcattaattagttacctaggaattagttgtaat |
35787701 |
T |
|
| Q |
101 |
cgcctaggaattaaatttatcccaaataacacaccatcctcgaaagagaaaacctgactatcaaggtcaagaaataaaaaatcaacaaaatttaaatgat |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35787700 |
cgcctaggaattaactttatcccaaataacacaccatcctcgaaagagaaaacctgactatcaaggtcaagaaataaaaaatcaacaaaatttaaatgat |
35787601 |
T |
|
| Q |
201 |
tccaaattcccaaaccaatgtgcacatatctaatggt |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35787600 |
tccaaattcccaaaccaatgtgcacatatctaatggt |
35787564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 258 - 454
Target Start/End: Complemental strand, 35787538 - 35787340
Alignment:
| Q |
258 |
ttctttattcacttacaaagcaaaacaatccctttcattcattactctctctcatatataaaaa--taaacaaaattgcacaaccgccctattccaccat |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35787538 |
ttctttattcacttacaaagcaaaacaatccctttcattcattactctctctcatatataaaaaaataaacaaaattgcacaaccgccctattccaccat |
35787439 |
T |
|
| Q |
356 |
taacattgaaaccactttcatttcatcacagaagaaacaataacactgaacgaggtaaccaagtagtcactctccatcttttcttttttcattcatctc |
454 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35787438 |
taacattgaaaccactttcatttcatcacagaagaaacaataacactgaacgaggtaaccaagtagtcactctccatcttttcttttttcattcatctc |
35787340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University