View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5186_low_5 (Length: 365)
Name: NF5186_low_5
Description: NF5186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5186_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 38181465 - 38181118
Alignment:
| Q |
1 |
gagatatatatgttgataaagataaaagttctacgaatatagatagaatataattaaaatgctaattaatatagctgttttattagaatgcaggattcca |
100 |
Q |
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| T |
38181465 |
gagatatatatgttgataaagataaaagttctacaaatatagatagaatataattaaaatgctaattaatatagctgttttattagaatgtaggattcca |
38181366 |
T |
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| Q |
101 |
gttacattattgtagacatctgtttagacaaacagggtcaccacattatattctagatagtgtctttgatcatcttaaactcaatacttgatcttcctag |
200 |
Q |
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| T |
38181365 |
gttacattattttagacatctgtttagacaaacagggtcaccacattatagtctagatagtgtctttcatcatgttaaactcaatacttgatcttcctag |
38181266 |
T |
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| Q |
201 |
aacttggaaaagcttgacctgtagaaggtggcacagtactttctggaccagcatgaactggaactggttcaccagtaggcataacatggtttgttgttgg |
300 |
Q |
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| T |
38181265 |
aacttggaaaagcttgacctgtagaaggtggcacagtactttctggaccagcatgaactggaactggttcaccagtaggtataacatggtttgttgttgg |
38181166 |
T |
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| Q |
301 |
aaaagcttgttttgtagaaggtggcgcagttctttctggaatagcatg |
348 |
Q |
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| T |
38181165 |
aaaagcttgttttgtagaaggtggcgcagttctttctggaatagcatg |
38181118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 204 - 349
Target Start/End: Complemental strand, 38181169 - 38181024
Alignment:
| Q |
204 |
ttggaaaagcttgacctgtagaaggtggcacagtactttctggaccagcatgaactggaactggttcaccagtaggcataacatggtttgttgttggaaa |
303 |
Q |
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| T |
38181169 |
ttggaaaagcttgttttgtagaaggtggcgcagttctttctggaatagcatgaactggaactggttcaccagtaggcataacatggtttgttgttggaag |
38181070 |
T |
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| Q |
304 |
agcttgttttgtagaaggtggcgcagttctttctggaatagcatgt |
349 |
Q |
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| T |
38181069 |
agcttgacgagtagaaggtggcacagtactttctggcataacatgt |
38181024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 138 - 265
Target Start/End: Complemental strand, 21008388 - 21008261
Alignment:
| Q |
138 |
tcaccacattatattctagatagtgtctttgatcatcttaaactcaatacttgatcttcctagaacttggaaaagcttgacctgtagaaggtggcacagt |
237 |
Q |
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| T |
21008388 |
tcaccagattatagtctagatagagtcattcatcgtgttaaactcaaaacttcatcttcctagaacttggaatagcatgacatggagaaggtagcacagt |
21008289 |
T |
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| Q |
238 |
actttctggaccagcatgaactggaact |
265 |
Q |
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| T |
21008288 |
gctttcaggaatagcatgaactggaact |
21008261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 41 - 237
Target Start/End: Complemental strand, 20951831 - 20951647
Alignment:
| Q |
41 |
agatagaatataattaaaatgctaattaatatagctgttttattagaatgcaggattccagttacattattgtagacatctgtttagacaaacagggtca |
140 |
Q |
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| T |
20951831 |
agatagaataaaaataaaatgctaattaatatatctgttttattagaatgtggaattcaaattatattattgttgacatctat----------aaggtca |
20951742 |
T |
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| Q |
141 |
ccacattatattctagatagtgtctttgatcatcttaaactcaatacttgatcttcctagaacttggaaaagcttgacctgtagaaggtggcacagt |
237 |
Q |
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| T |
20951741 |
ccacattctagtctagatagagtctttcatcatgttaaactca--acttcatcttccttgaacttggaatagcatgacatggagaaggtagcacagt |
20951647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 209
Target Start/End: Complemental strand, 7385713 - 7385633
Alignment:
| Q |
129 |
caaacagggtcaccacattatattctagatagtgtctttgatcatcttaaactcaatacttgatcttcctagaacttggaa |
209 |
Q |
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|||| ||||| ||||||||||| ||||||| |||||| ||||| |||| ||| | ||| |||||||||||||||||||| |
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| T |
7385713 |
caaaaagggttaccacattatagtctagatctagtctttcatcatattaatctccaaactcgatcttcctagaacttggaa |
7385633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 38180865 - 38180829
Alignment:
| Q |
253 |
atgaactggaactggttcaccagtaggcataacatgg |
289 |
Q |
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| T |
38180865 |
atgaactggaactggttcaccagtgggcagaacatgg |
38180829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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