View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5186_low_8 (Length: 251)
Name: NF5186_low_8
Description: NF5186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5186_low_8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 35 - 251
Target Start/End: Original strand, 8755995 - 8756211
Alignment:
| Q |
35 |
aacaaatcgagttgatattgaattgatccaacatcaaatgggtgacatagtgaaacaaatattagcaaaaccgatccaactagcagaccaagtaacaaaa |
134 |
Q |
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| T |
8755995 |
aacaaatcgagttgatattgaattgatccaacatcaaatgggtgacatagtgaaacaaatattagcaaaaccgatccaactagcagaccaagtaacaaaa |
8756094 |
T |
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| Q |
135 |
tcagcagatgaagcaagttcattcaaacaagaatgttctgagctcaaatccaaaacagaaaaactcgctactcttctccgtcaagcagcaagagcgagct |
234 |
Q |
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| T |
8756095 |
gcagcagatgaagcaagttcattcaaacaagaatgttctgagctcaaatccaaaacagaaaaactcgctactcttctccgtcaagcagcaagagcgagct |
8756194 |
T |
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| Q |
235 |
ctgatctctacgaacgt |
251 |
Q |
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| T |
8756195 |
ctgatctctacgaacgt |
8756211 |
T |
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Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 78 - 250
Target Start/End: Complemental strand, 32032367 - 32032192
Alignment:
| Q |
78 |
gacatagtgaaacaaatattagcaaaaccgatccaactagcagaccaagtaacaaaatcagcagatgaagcaagttca---ttcaaacaagaatgttctg |
174 |
Q |
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|||||||| |||||| | |||||||||||||||||||||||||||||||||| ||| |||| || |||| ||| ||| ||||||||||||||| | |
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| T |
32032367 |
gacatagttaaacaattgttagcaaaaccgatccaactagcagaccaagtaagcaaagcagctgaagaaggaagctcatctttcaaacaagaatgtctag |
32032268 |
T |
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| Q |
175 |
agctcaaatccaaaacagaaaaactcgctactcttctccgtcaagcagcaagagcgagctctgatctctacgaacg |
250 |
Q |
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| T |
32032267 |
acctcaaatcaaaaaccgaaaaactcgcttctcttctccgacaagctgcaagatcaagctccgatttatacgaacg |
32032192 |
T |
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