View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5186_low_9 (Length: 251)

Name: NF5186_low_9
Description: NF5186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5186_low_9
NF5186_low_9
[»] chr7 (2 HSPs)
chr7 (1-100)||(47118313-47118412)
chr7 (116-145)||(47118268-47118297)
[»] chr3 (2 HSPs)
chr3 (10-46)||(38216380-38216416)
chr3 (10-42)||(14741939-14741971)
[»] chr4 (1 HSPs)
chr4 (10-47)||(44362906-44362943)


Alignment Details
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 47118412 - 47118313
Alignment:
Q  1 tatgtagattggtgaaaatatggggaccaaaactgcaattaaacctagtttatatgatatgtactatattattgtagttattgaaaaaatatagttatga 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||  ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  47118412 tatgtagattggtgaaaatatggggactaaaactgcaattaagtctaatttatatgatatgtactatattattgttgttattgaaaaaatatagttatga 47118313  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 145
Target Start/End: Complemental strand, 47118297 - 47118268
Alignment:
Q  116 ataatttgaaagtcacaattatctatactt 145  Q
    ||||||||||||||||||||||||||||||    
T  47118297 ataatttgaaagtcacaattatctatactt 47118268  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 38216380 - 38216416
Alignment:
Q  10 tggtgaaaatatggggaccaaaactgcaattaaacct 46  Q
    ||||||||||| |||||||||||||||||||||||||    
T  38216380 tggtgaaaatagggggaccaaaactgcaattaaacct 38216416  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 14741971 - 14741939
Alignment:
Q  10 tggtgaaaatatggggaccaaaactgcaattaa 42  Q
    ||||||||||| |||||||||||||||||||||    
T  14741971 tggtgaaaatagggggaccaaaactgcaattaa 14741939  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 44362943 - 44362906
Alignment:
Q  10 tggtgaaaatatggggaccaaaactgcaattaaaccta 47  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  44362943 tggtgaaaatagggggaccaaaactgcaattaagccta 44362906  T

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