View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5187-Insertion-1 (Length: 846)
Name: NF5187-Insertion-1
Description: NF5187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5187-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 221 - 755
Target Start/End: Original strand, 10174959 - 10175497
Alignment:
| Q |
221 |
tgaaaaacaacaaattagtcggtgcaaaactttgttgttaaatatcttatcacttttctaatctataatcacatatattctctaactacttcattttcaa |
320 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
10174959 |
tgaaaaacaacaaattagtccgtgcaaaactttgttgttaaatatcttatcacttttctaatctataatcacatctattttctaactacttcattttcaa |
10175058 |
T |
|
| Q |
321 |
attgtagagtatattttgtttcaatcaatttgcgagacaagatttgttcgaaagtat----acttatgattggtttgtt-aaaactttttctttgtgtaa |
415 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||| ||||||||||| | |||||| |
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| T |
10175059 |
attgtagagtatattttgtttcaatcaatttgcgagacaagatttgttcgaaagtatgtatacttatgatcggttggtttaaaactttttcctcgtgtaa |
10175158 |
T |
|
| Q |
416 |
ttaatttggactaaaatacttaaccnnnnnnnttgtactaaaagaagtgcatccaaacaaagtatagttggattaaaacaagcacatccaaaaatgtact |
515 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10175159 |
ttaatttggactaaaatacttaaccaaaaaaattgtactaaaagaagtgcatccaaacaaagtatagttggattaaaacaagcacatccaaaaatgtact |
10175258 |
T |
|
| Q |
516 |
tgtccagaagctaatgccactttgtttctaattacgattgttgagtttaaatcaacttattccatttcctttaaaattagagaagatataaataggaggt |
615 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
10175259 |
tgtccagaagctaatgccactttgtttctaattacgattgttgagtttaaatcaacttattccatttcctttaaaattagagaagatat-aataggaggt |
10175357 |
T |
|
| Q |
616 |
atgtaatacaaagatggtctagactcgaatatagatgctccagcgaaagtatgaacactctattagtattccccaaataaaagatagtattagcgtgaaa |
715 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10175358 |
atgtaatacaaagatggtctagactcgaatatagatgctccagcgaaagtatgaacactctattagtattccccaaataaaagatagtattagcgtgaaa |
10175457 |
T |
|
| Q |
716 |
ctaatctctatattgagagatgatagtaacgggtgaatag |
755 |
Q |
| |
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| | ||||||||||||||||||||||||||| |||||||| |
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| T |
10175458 |
cgagtctctatattgagagatgatagtaacgagtgaatag |
10175497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 1e-40; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 131 - 220
Target Start/End: Original strand, 49391713 - 49391802
Alignment:
| Q |
131 |
atgacagagcggttttaaagccattccagaccggatataggcccggttggcggttgaaccggccggtccggtccgattttaattaccttg |
220 |
Q |
| |
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| T |
49391713 |
atgacagagcggttttaaagccattccggaccggatataggcccggttggcggttgaaccggccggtccggtccgattttaattaccttg |
49391802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 49391589 - 49391654
Alignment:
| Q |
8 |
gtctgtgaagtaacgcgaaatgaaa-gaaccataacgcggtccaaaccgtctaacctcttgaaccg |
72 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||| ||||| |
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| T |
49391589 |
gtctgtgaagtaacgcgaaatgaaaagaaccaaaacgcggtccaaaccgtcaaacctcttaaaccg |
49391654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 50211733 - 50211777
Alignment:
| Q |
181 |
cggttgaaccggccggtccggtccgattttaattaccttgtgaaa |
225 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
50211733 |
cggttgaaccggccggtccggtccggttttaattaccttgggaaa |
50211777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 220
Target Start/End: Original strand, 21690997 - 21691086
Alignment:
| Q |
131 |
atgacagagcggttttaaagccattccagaccggatataggcccggttggcggttgaaccggccggtccggtccgattttaattaccttg |
220 |
Q |
| |
|
|||||| |||||||| | |||||||| |||||| ||| |||||| ||||||||||||||||||||||||| ||||||| |||||| |
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| T |
21690997 |
atgacatagcggtttacaggccattccgaaccggacatataaccggttcacggttgaaccggccggtccggtccggttttaatcaccttg |
21691086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 1e-34; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 131 - 230
Target Start/End: Complemental strand, 16970740 - 16970641
Alignment:
| Q |
131 |
atgacagagcggttttaaagccattccagaccggatataggcccggttggcggttgaaccggccggtccggtccgattttaattaccttgtgaaaaacaa |
230 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||| |||| |||| |
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| T |
16970740 |
atgacagagcggttttaaagccattccggaccggatataggcccggttggcggttgaaccggccggttcggtccggttttaattacattgagaaatacaa |
16970641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 16970863 - 16970798
Alignment:
| Q |
8 |
gtctgtgaagtaacgcgaaatgaa-agaaccataacgcggtccaaaccgtctaacctcttgaaccg |
72 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||| ||||||||||||| |||||||||||||| |
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|
| T |
16970863 |
gtctgtgaagtaacgcgaaatgaacagaaccaaaacgtggtccaaaccgtcaaacctcttgaaccg |
16970798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 217
Target Start/End: Original strand, 6127095 - 6127181
Alignment:
| Q |
131 |
atgacagagcggttttaaagccattccagaccggatataggcccggttggcggttgaaccggccggtccggtccgattttaattacc |
217 |
Q |
| |
|
|||||||||||||||| | |||||| ||||| | ||||| |||||| |||||||||||||||||||| |||| |||||| |||| |
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|
| T |
6127095 |
atgacagagcggttttgagatcattccggaccgaacataggtccggttcacggttgaaccggccggtccgatccggttttaactacc |
6127181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 220
Target Start/End: Original strand, 51353834 - 51353923
Alignment:
| Q |
131 |
atgacagagcggttttaaagccattccagaccggatataggcccggttggcggttgaaccggccggtccggtccgattttaattaccttg |
220 |
Q |
| |
|
|||||| | |||||||||||||||| | ||||||| || || |||||| | |||||||||||||||||||||| |||||||| ||||| |
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|
| T |
51353834 |
atgacataacggttttaaagccatttcggaccggacattggtccggttcacaattgaaccggccggtccggtccggttttaatttccttg |
51353923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 220
Target Start/End: Original strand, 11612703 - 11612785
Alignment:
| Q |
138 |
agcggttttaaagccattccagaccggatataggcccggttggcggttgaaccggccggtccggtccgattttaattaccttg |
220 |
Q |
| |
|
||||||||| | || ||||||||||||| || | |||||| ||||||||||||||||||||||||| |||| | ||||||| |
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|
| T |
11612703 |
agcggttttcatgctattccagaccggacctatgtccggttcacggttgaaccggccggtccggtccggtttttaataccttg |
11612785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 799 - 843
Target Start/End: Original strand, 20573481 - 20573527
Alignment:
| Q |
799 |
tttaagaaactt--aaaaaacctttgaaattgtcaacgtctgtcaat |
843 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
20573481 |
tttaagaaacttcaaaaaaacctttgaaattgtcaacgtatgtcaat |
20573527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 210
Target Start/End: Original strand, 22055713 - 22055742
Alignment:
| Q |
181 |
cggttgaaccggccggtccggtccgatttt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
22055713 |
cggttgaaccggccggtccggtccgatttt |
22055742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 27183683 - 27183647
Alignment:
| Q |
181 |
cggttgaaccggccggtccggtccgattttaattacc |
217 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |
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|
| T |
27183683 |
cggttgaaccggccggtccggtccggttttaattacc |
27183647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 220
Target Start/End: Complemental strand, 11037603 - 11037564
Alignment:
| Q |
181 |
cggttgaaccggccggtccggtccgattttaattaccttg |
220 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
11037603 |
cggttgaaccggctggttcggtccgattttaattaccttg |
11037564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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