View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5187-Insertion-2 (Length: 481)
Name: NF5187-Insertion-2
Description: NF5187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5187-Insertion-2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 7 - 297
Target Start/End: Original strand, 2586396 - 2586686
Alignment:
| Q |
7 |
agattttatgatccaattggtggagagattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
2586396 |
agattttatgatccaattggtggagagattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtc |
2586495 |
T |
|
| Q |
107 |
aagaacctgctttgtttgcaacaagtattaaggagaatatactttttggaagagaggatgctacatttgaagaaattatggatgctgctaaagcttccaa |
206 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| || |
|
|
| T |
2586496 |
aagaacctgctttgtttgcaacaagcatcaaggagaatatactttttggaagagaggatgctacatttgaagatgttgtggatgctgctaaagcttctaa |
2586595 |
T |
|
| Q |
207 |
tgctcataatttcatatcaatgttgccacaaggatatgatactcaggttagtgttgattgcttttgtcaatatgctataaaccaaatatga |
297 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2586596 |
tgctcataatttcatttcaatgttgccacaaggatatgatactcaggttagtgttgattgcttttgtaaatatgctataaaccaaatatga |
2586686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 7 - 272
Target Start/End: Original strand, 2620086 - 2620351
Alignment:
| Q |
7 |
agattttatgatccaattggtggagagattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2620086 |
agattttatgatccaattggtggagagattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtc |
2620185 |
T |
|
| Q |
107 |
aagaacctgctttgtttgcaacaagtattaaggagaatatactttttggaagagaggatgctacatttgaagaaattatggatgctgctaaagcttccaa |
206 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
2620186 |
aagaacctgctttgtttgcaacaagcattaaggagaatatactttttggaagagaggatgctacatatgaagaaattgtggatgctgctaaagcttccaa |
2620285 |
T |
|
| Q |
207 |
tgctcataatttcatatcaatgttgccacaaggatatgatactcaggttagtgttgattgcttttg |
272 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2620286 |
tgctcataatttcatttcattgttgccacaaggatatgatactcaggttagtgttgattgcttttg |
2620351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 7 - 275
Target Start/End: Original strand, 2432811 - 2433079
Alignment:
| Q |
7 |
agattttatgatccaattggtggagagattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2432811 |
agattttatgatccaattggtggagagattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtc |
2432910 |
T |
|
| Q |
107 |
aagaacctgctttgtttgcaacaagtattaaggagaatatactttttggaagagaggatgctacatttgaagaaattatggatgctgctaaagcttccaa |
206 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||| |
|
|
| T |
2432911 |
aagaacctgctttgtttgcaacaagcattaaggagaatatactttttggaagagaggatgctacatatgaagaaattgtggatgctgccaaagcttccaa |
2433010 |
T |
|
| Q |
207 |
tgctcataatttcatatcaatgttgccacaaggatatgatactcaggttagtgttgattgcttttgtca |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
2433011 |
tgctcataatttcatatcaatgttgccacaaggatatgatactcaggttagtgttaattacttttgtca |
2433079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 7 - 275
Target Start/End: Complemental strand, 2677498 - 2677230
Alignment:
| Q |
7 |
agattttatgatccaattggtggagagattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2677498 |
agattttatgatccaattggtggagagattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtc |
2677399 |
T |
|
| Q |
107 |
aagaacctgctttgtttgcaacaagtattaaggagaatatactttttggaagagaggatgctacatttgaagaaattatggatgctgctaaagcttccaa |
206 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| || |
|
|
| T |
2677398 |
aagaacctgctttgtttgcaacaagcattatggagaatatactttttggaagagaggatgctacatatgaagaaatcgtggatgctgctaaagcttctaa |
2677299 |
T |
|
| Q |
207 |
tgctcataatttcatatcaatgttgccacaaggatatgatactcaggttagtgttgattgcttttgtca |
275 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
2677298 |
tgctcataatttcatttcaatgttgccacaaggatatgatactcaggttagtgttaattacttttgtca |
2677230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 7 - 259
Target Start/End: Complemental strand, 2572662 - 2572410
Alignment:
| Q |
7 |
agattttatgatccaattggtggagagattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
2572662 |
agattttatgatccaattggtggagagattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtc |
2572563 |
T |
|
| Q |
107 |
aagaacctgctttgtttgcaacaagtattaaggagaatatactttttggaagagaggatgctacatttgaagaaattatggatgctgctaaagcttccaa |
206 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
2572562 |
aagaacctgctttgtttgcaacaagcattaaggagaatatactttttggaagagaggatgctacatatgaagaaattgtggatgctgctaaagcttccaa |
2572463 |
T |
|
| Q |
207 |
tgctcataatttcatatcaatgttgccacaaggatatgatactcaggttagtg |
259 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2572462 |
tgctcataatttcatttcattgttgccacaaggatatgatactcaggttagtg |
2572410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 7 - 259
Target Start/End: Original strand, 2448678 - 2448930
Alignment:
| Q |
7 |
agattttatgatccaattggtggagagattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2448678 |
agattttatgatccaattggtggagagattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtc |
2448777 |
T |
|
| Q |
107 |
aagaacctgctttgtttgcaacaagtattaaggagaatatactttttggaagagaggatgctacatttgaagaaattatggatgctgctaaagcttccaa |
206 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||| |
|
|
| T |
2448778 |
aagaacctgctttgtttgcaacaagcattaaggagaatatactttttggaagagaggatgctacatatgaagatgttgtggatgctgctaaagcttccaa |
2448877 |
T |
|
| Q |
207 |
tgctcataatttcatatcaatgttgccacaaggatatgatactcaggttagtg |
259 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2448878 |
tgctcataatttcatttcattgttgccacaaggatatgatactcaggttagtg |
2448930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 7 - 258
Target Start/End: Complemental strand, 2600240 - 2599989
Alignment:
| Q |
7 |
agattttatgatccaattggtggagagattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2600240 |
agattttatgatccaattggtggagagattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtc |
2600141 |
T |
|
| Q |
107 |
aagaacctgctttgtttgcaacaagtattaaggagaatatactttttggaagagaggatgctacatttgaagaaattatggatgctgctaaagcttccaa |
206 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||| |||| || |
|
|
| T |
2600140 |
aagaacctgctttgtttgcaacaagcattaaggagaatatactttttggaagagaggatgctacatatgaagaaattgtgaatgctgctaaaacttctaa |
2600041 |
T |
|
| Q |
207 |
tgctcataatttcatatcaatgttgccacaaggatatgatactcaggttagt |
258 |
Q |
| |
|
||||||||||||||| ||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
2600040 |
tgctcataatttcatttcattgttgccacaagtatatgatactcaggttagt |
2599989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 7 - 259
Target Start/End: Complemental strand, 2645060 - 2644808
Alignment:
| Q |
7 |
agattttatgatccaattggtggagagattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtc |
106 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2645060 |
agattttatgatccaatttgtggagagattcttcttgatggagttgccattcataagttgcaacttcagtggcttaggtctcaaatgggtttagtaagtc |
2644961 |
T |
|
| Q |
107 |
aagaacctgctttgtttgcaacaagtattaaggagaatatactttttggaagagaggatgctacatttgaagaaattatggatgctgctaaagcttccaa |
206 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| || | ||||||||||||| |||||| |
|
|
| T |
2644960 |
aagaacctgctttgtttgcaacaagcattaaggagaatatactttttggaagagaggatgctacatatgaagatgttgtagatgctgctaaagtttccaa |
2644861 |
T |
|
| Q |
207 |
tgctcataatttcatatcaatgttgccacaaggatatgatactcaggttagtg |
259 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
2644860 |
tgctcataatttcatttcattgttgccacaaggatatgatacgcaggttagtg |
2644808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 320 - 481
Target Start/End: Complemental strand, 2677266 - 2677105
Alignment:
| Q |
320 |
gatataatactcaggttagtgttaattacttttgtcacattatgctattaataaaatataatagaattttcgtaagatatgattcttgggtyagtgctaa |
419 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
2677266 |
gatatgatactcaggttagtgttaattacttttgtcacattatgctattaatcaaatataatagaattttcgtaagatatgatacttgggttagtgctaa |
2677167 |
T |
|
| Q |
420 |
ttgcttttgtcattaatatgctattaaccaaatatgagtaattaagtggaattttccttaga |
481 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2677166 |
ttgcttttgtcattaatatgctattaaccaaatatgagtaattaagtggaattttccttaga |
2677105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 320 - 473
Target Start/End: Original strand, 2433043 - 2433203
Alignment:
| Q |
320 |
gatataatactcaggttagtgttaattacttttgtcacattatgctatt-------aataaaatataatagaattttcgtaagatatgattcttgggtya |
412 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| || ||| |||| ||||||| | |
|
|
| T |
2433043 |
gatatgatactcaggttagtgttaattacttttgtcacattatgctattcagtattaaccaaatataatagaattttcctaggatttgatacttgggtta |
2433142 |
T |
|
| Q |
413 |
gtgctaattgcttttgtcattaatatgctattaaccaaatatgagtaattaagtggaattt |
473 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
2433143 |
gtgctaattgcttttgtcattaatatgctattaaccaaatatgagtagttatgtggaattt |
2433203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 239 - 332
Target Start/End: Complemental strand, 2677191 - 2677094
Alignment:
| Q |
239 |
gatatgatactcaggttagtgttgattgcttttgtca---atatgctataaaccaaatatgagtaatt-agtggaatcttcctaagatataatactca |
332 |
Q |
| |
|
||||||||||| |||||||| | ||||||||||||| ||||||||| |||||||||||||||||| |||||||| ||||| |||||| ||||||| |
|
|
| T |
2677191 |
gatatgatacttgggttagtgctaattgcttttgtcattaatatgctattaaccaaatatgagtaattaagtggaattttccttagatatgatactca |
2677094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 338
Target Start/End: Original strand, 2433123 - 2433227
Alignment:
| Q |
237 |
aggatatgatactcaggttagtgttgattgcttttgtca---atatgctataaaccaaatatgagtaatta-gtggaatcttcctaagatataatactca |
332 |
Q |
| |
|
||||| ||||||| |||||||| | ||||||||||||| ||||||||| ||||||||||||||| ||| ||||||| |||||| ||||| ||||| | |
|
|
| T |
2433123 |
aggatttgatacttgggttagtgctaattgcttttgtcattaatatgctattaaccaaatatgagtagttatgtggaat-ttcctaggatatgatactta |
2433221 |
T |
|
| Q |
333 |
ggttag |
338 |
Q |
| |
|
|||||| |
|
|
| T |
2433222 |
ggttag |
2433227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 338
Target Start/End: Original strand, 2588400 - 2588452
Alignment:
| Q |
286 |
aaccaaatatgagtaattagtggaatcttcctaagatataatactcaggttag |
338 |
Q |
| |
|
||||||||||||||||||| |||||| |||||| ||||| ||||||| ||||| |
|
|
| T |
2588400 |
aaccaaatatgagtaattactggaattttcctaggatatgatactcatgttag |
2588452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 10 - 170
Target Start/End: Complemental strand, 17872833 - 17872673
Alignment:
| Q |
10 |
ttttatgatccaattggtggagagattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaag |
109 |
Q |
| |
|
|||||||||||||| ||||| ||||| | |||||||||||| ||||||| ||| ||||| |||| ||||||||||| ||||| || || ||||||| |
|
|
| T |
17872833 |
ttttatgatccaatcggtggtgagatacgtcttgatggagtagctattcgtaacttgcagattaaatggcttaggtcaatgatggggttggttagtcaag |
17872734 |
T |
|
| Q |
110 |
aacctgctttgtttgcaacaagtattaaggagaatatactttttggaagagaggatgctac |
170 |
Q |
| |
|
|||||||||| ||||||||||| ||||| ||||||||| ||||||| | ||| |||||||| |
|
|
| T |
17872733 |
aacctgctttatttgcaacaagcattaaagagaatataatttttggtaaagaagatgctac |
17872673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University