View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5187_high_1 (Length: 366)

Name: NF5187_high_1
Description: NF5187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5187_high_1
NF5187_high_1
[»] chr6 (3 HSPs)
chr6 (1-342)||(17075410-17075751)
chr6 (124-356)||(11053470-11053702)
chr6 (1-128)||(11064036-11064163)
[»] chr8 (3 HSPs)
chr8 (16-259)||(17683923-17684166)
chr8 (13-172)||(36159902-36160061)
chr8 (291-356)||(17684198-17684263)
[»] chr4 (2 HSPs)
chr4 (1-263)||(10559739-10560001)
chr4 (286-357)||(10558419-10558490)
[»] chr1 (1 HSPs)
chr1 (1-341)||(26741538-26741878)


Alignment Details
Target: chr6 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 17075751 - 17075410
Alignment:
Q  1 tcatcaatcacaaccttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcgaag 100  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || ||||| ||||| ||| ||| |||||    
T  17075751 tcatcaaacacaaccttctcatttccatgcactgccacccaattaacccaatcattgttaacggaccccgatgacgaactaccatccgaagctcccgaag 17075652  T
Q  101 aaaccgccctaaccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcagaacggtggcccggtctttgctgggcaa 200  Q
    ||||| |  | |||||||||||||| || ||||| ||||||||||||||| ||||||||||||| ||||| | ||| | ||  || |||||||| ||||     
T  17075651 aaaccacttttaccgcctttttaaggcgttccgagccttgtaattttctcaatttagattttaagatgtgtaaaactgaggaacgatctttgctaggcag 17075552  T
Q  201 ccgcgccaccttcttcaaactaaataccggatgccgcaaaattccattcactttcttcctctttataactattgaactggatttagcaaaaggccgcacc 300  Q
    |||||||||||| |||| |||||  ||||  || ||||||||||| ||||||||||||| |||  |||| || | ||||||||  ||||  |||||||||    
T  17075551 ccgcgccacctttttcagactaatcaccgagtgtcgcaaaattccgttcactttcttccgcttgttaacgatggtactggattgtgcaatgggccgcacc 17075452  T
Q  301 actttcttaaccttctttcttgtcgaagaaataacaccagcg 342  Q
    ||||||||||||||||| |||| |||||||||||||||||||    
T  17075451 actttcttaaccttcttccttgccgaagaaataacaccagcg 17075410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 124 - 356
Target Start/End: Complemental strand, 11053702 - 11053470
Alignment:
Q  124 agacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcagaacggtggcccggtctttgctgggcaaccgcgccaccttcttcaaactaa 223  Q
    ||||| || |||||||||||||| ||||||||||||||||| || || | || ||||| ||| |||||||| ||||||||||||||||| ||||||||||    
T  11053702 agacggtctgaaccttgtaatttcctcgatttagattttaagatatgtaaaatggtggaccgatctttgctaggcaaccgcgccacctttttcaaactaa 11053603  T
Q  224 ataccggatgccgcaaaattccattcactttcttcctctttataactattga-actggatttagcaaaaggccgcaccactttcttaaccttctttcttg 322  Q
      ||||  ||||||| ||  ||||||||||||||||  ||  |  | |  || || |||||  |||| ||||||||||||||||||||||||||||||||    
T  11053602 tcaccgagtgccgcagaaccccattcactttcttccgattgtttgc-acagataccggattgggcaataggccgcaccactttcttaaccttctttcttg 11053504  T
Q  323 tcgaagaaataacaccagcgactacatgatgatg 356  Q
     ||| ||||||||||||||| |  ||||||||||    
T  11053503 ccgatgaaataacaccagcgtcaccatgatgatg 11053470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 11064163 - 11064036
Alignment:
Q  1 tcatcaatcacaaccttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcgaag 100  Q
    ||||||| ||| || ||||||||| ||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| || || ||||||  ||| |    
T  11064163 tcatcaaccactactttctcattctcatgcactgccacccaattgacccaatcattattaaccgatcccgacgaggaactaccttccgaaacttccgagg 11064064  T
Q  101 aaaccgccctaaccgcctttttaagacg 128  Q
    ||||| || ||||| |||||||||||||    
T  11064063 aaaccaccttaaccacctttttaagacg 11064036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 128; Significance: 4e-66; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 17683923 - 17684166
Alignment:
Q  16 ttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcgaagaaaccgccctaaccg 115  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| || || ||||||| ||| |||||| || | |||     
T  17683923 ttctcattcccatgcactgccacccaattaacccaatcattattaaccgacctcgacgaggaactaccttccgaaactcccgaggaaaccacctttacca 17684022  T
Q  116 cctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcagaacggtggcccggtctttgctgggcaaccgcgccaccttctt 215  Q
    ||||||||||||| || |||||||||||||| ||||||||||||||||| || || | |||||||| ||| |||||||| |||||| |||||||||| ||    
T  17684023 cctttttaagacggtctgaaccttgtaatttcctcgatttagattttaagatatgtaaaacggtggaccgatctttgctaggcaactgcgccaccttttt 17684122  T
Q  216 caaactaaataccggatgccgcaaaattccattcactttcttcc 259  Q
    ||||||||  ||||  ||||||||||  ||||||||||||||||    
T  17684123 caaactaatcaccgagtgccgcaaaaccccattcactttcttcc 17684166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 13 - 172
Target Start/End: Original strand, 36159902 - 36160061
Alignment:
Q  13 accttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcgaagaaaccgccctaa 112  Q
    ||||||||||||||||||||  ||||  ||||||||||||| |||||||| || |  || || |||||   ||||||| ||| ||||||  || || | |    
T  36159902 accttctcattcccatgcacaaccacaaaattaacccaatcgttgttaactgaacatgaagaagaacttttatctgaagctcccgaagaccccaccttca 36160001  T
Q  113 ccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgca 172  Q
    |||||||||| ||||||||||| || ||||||||||| | ||||||||||| ||||||||    
T  36160002 ccgcctttttcagacgatccgacccatgtaattttctagctttagattttagaatgtgca 36160061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 356
Target Start/End: Original strand, 17684198 - 17684263
Alignment:
Q  291 aggccgcaccactttcttaaccttctttcttgtcgaagaaataacaccagcgactacatgatgatg 356  Q
    |||||||||||||||| | ||||||||||||| ||| ||||||||||||||| |  ||||||||||    
T  17684198 aggccgcaccactttcctgaccttctttcttgccgatgaaataacaccagcgtcaccatgatgatg 17684263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 10560001 - 10559739
Alignment:
Q  1 tcatcaatcacaaccttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcgaag 100  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||| || ||||| ||||||||| ||| |||||    
T  10560001 tcatcaactacaaccttctcattcccatgcactgccacccaattaacccaatcattgttatctgaacccgaggaagaactaccatctgaagctcccgaag 10559902  T
Q  101 aaaccgccctaaccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcagaacggtggcccggtctttgctgggcaa 200  Q
    ||||| || | ||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||| | ||||||||   | |||||||| ||||     
T  10559901 aaaccacctttaccgcctttttgagacgatctgatccttgtaattttctcgatttagattttaagatgtgtaaaacggtggattgatctttgctaggcag 10559802  T
Q  201 ccgcgccaccttcttcaaactaaataccggatgccgcaaaattccattcactttcttcctctt 263  Q
    | || ||||||| ||||||||||  ||||  ||||||| ||  ||||||||||||||||||||    
T  10559801 ctgccccacctttttcaaactaatcaccgagtgccgcagaaacccattcactttcttcctctt 10559739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 286 - 357
Target Start/End: Complemental strand, 10558490 - 10558419
Alignment:
Q  286 gcaaaaggccgcaccactttcttaaccttctttcttgtcgaagaaataacaccagcgactacatgatgatgt 357  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |  |||||||||||    
T  10558490 gcaataggccgcaccactttcttaaccttctttcttgccgaagaaataacaccagcgtcaccatgatgatgt 10558419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 6e-62; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 26741538 - 26741878
Alignment:
Q  1 tcatcaatcacaaccttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcgaag 100  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||| || ||||| || ||||| ||||| ||| ||| |||||    
T  26741538 tcatcaaccacaaccttctcattcccatgcacttccacccaattaacccaatcgttgttaactgaacccgaggaagaactaccatccgaagctcccgaag 26741637  T
Q  101 aaaccgccctaaccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcagaacggtggcccggtctttgctgggcaa 200  Q
    ||||| |||| || ||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||| | ||| ||||  || ||||||| |||||     
T  26741638 aaaccacccttacagccttcttaagacgatccgatccttgtaattttctcgacttagattttaagatgtgtaaaactgtggaacgatctttgcagggcag 26741737  T
Q  201 ccgcgccaccttcttcaaactaaataccggatgccgcaaaattccattcactttcttcctctttataactattgaactggatttagcaaaaggccgcacc 300  Q
    |||  ||||||| ||||||||||  ||||| | ||| || ||  ||||||||||||||| |||  |||| |  | ||  |||| ||||| |||| || ||    
T  26741738 ccgatccacctttttcaaactaatcaccgggttccgtaagatctcattcactttcttccgcttgttaacaaaggtacatgattgagcaataggctgcgcc 26741837  T
Q  301 actttcttaaccttctttcttgtcgaagaaataacaccagc 341  Q
    ||| ||||||||||||| || | ||| ||||||||||||||    
T  26741838 actctcttaaccttcttcctagccgatgaaataacaccagc 26741878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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