View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5187_low_1 (Length: 477)
Name: NF5187_low_1
Description: NF5187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5187_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 7 - 341
Target Start/End: Original strand, 42982722 - 42983056
Alignment:
| Q |
7 |
ggaacacagaccaaactatagtacaagaaaacgttttgtatcacataatacaagattagcaggaaatgatagtagccattgataaatgcacaatcataac |
106 |
Q |
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| T |
42982722 |
ggaacactgaccaaactatagtgcaagaaaacgttttgtatcacataattcaagattagcaggaaatgatagtagccattgataaatgcacaatcataac |
42982821 |
T |
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| Q |
107 |
aatatattnnnnnnnnnntttcaaaaaccagcttaacaaaaattcaaaatttacagannnnnnnnn--atagaaaactatgaaacttgaaatacctgtgg |
204 |
Q |
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| T |
42982822 |
aatatattaaaaaaaaaat--caaaaaccagcttaacaaaaattcaaaatttacagatttttttttttatagaaaactatgaaacttgaaatacctgtgg |
42982919 |
T |
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| Q |
205 |
cagagtcaatttcttggattcattacttttaacaagctcatcatattgcagtttaatttttctctgcaaaacgctacttgaagaagtaaacggatacatg |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42982920 |
cagagtcaatttcttggattcattacttttaacaagctcatcatattgcagtttaatttttctctgcaaaacgctacttgaagaagtaaacggatacatg |
42983019 |
T |
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| Q |
305 |
caatcagactcaagcttcacacccgaatcaaaacccg |
341 |
Q |
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| T |
42983020 |
caatcagattcaagcttcacacccgaatcaaaacccg |
42983056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 417 - 461
Target Start/End: Original strand, 42983132 - 42983176
Alignment:
| Q |
417 |
ccgatggaacttccaaaactgaatccgggtcatcgaacaaggtat |
461 |
Q |
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| T |
42983132 |
ccgatggaacttccaaaactgaatccgggtcatcgaacaaggtat |
42983176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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