View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5187_low_4 (Length: 240)
Name: NF5187_low_4
Description: NF5187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5187_low_4 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 11 - 240
Target Start/End: Complemental strand, 4954028 - 4953799
Alignment:
| Q |
11 |
catcatcaactaccctccaatgaattgcgaaaacctgtcaccccagatcatcttaaacttcccaaaccattcaaatatcctgaaaggtatctaccttgtc |
110 |
Q |
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| T |
4954028 |
catcatcaactaccctccaatgaattgcgaaaacctgtcaccccagatcatctcaaactccccaaaccattcaaatatcctgaaaggtatctaccttgtc |
4953929 |
T |
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| Q |
111 |
ttttatattagattctctgtaatcacgcaattccataaagatctgatggctcatatttcgagttgtattttaaagttgattcagtgatggttaagactgc |
210 |
Q |
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| T |
4953928 |
ttttatattagattatctgtaatcacgcaattccataaagatctgacagctcatatttcgagttgtattttaaagttgattcagtgatggttaagactgt |
4953829 |
T |
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| Q |
211 |
gtgcttgtttgaattgattttgacatgttt |
240 |
Q |
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| T |
4953828 |
gtgcttgtttgaattgattttgacatgttt |
4953799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 11 - 240
Target Start/End: Complemental strand, 4938319 - 4938090
Alignment:
| Q |
11 |
catcatcaactaccctccaatgaattgcgaaaacctgtcaccccagatcatcttaaacttcccaaaccattcaaatatcctgaaaggtatctaccttgtc |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
4938319 |
catcatcaactaccctccaatgaattgcgaaaacctgtcaccccatatcatctcaaactccccaaaccattcaaatatcttgaaaggtatctaccttgtc |
4938220 |
T |
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| Q |
111 |
ttttatattagattctctgtaatcacgcaattccataaagatctgatggctcatatttcgagttgtattttaaagttgattcagtgatggttaagactgc |
210 |
Q |
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| T |
4938219 |
ttttatattagattctctgtaatgacgcaattccataaagatccgacggctcatatttcgagttgtattttaaagttgattcagtgatggttaagactgc |
4938120 |
T |
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| Q |
211 |
gtgcttgtttgaattgattttgacatgttt |
240 |
Q |
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|||||| ||||||||||||||||||||||| |
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| T |
4938119 |
gtgcttatttgaattgattttgacatgttt |
4938090 |
T |
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