View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5188-Insertion-1 (Length: 1044)
Name: NF5188-Insertion-1
Description: NF5188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5188-Insertion-1 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 465 - 967
Target Start/End: Complemental strand, 42158261 - 42157759
Alignment:
| Q |
465 |
gattctaggccggacaccattattgaggggcgaaccttggggtctccacttatgtttgtgagtttacaacaactattatcatttcgtctatcnnnnnnnn |
564 |
Q |
| |
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|||||||||| ||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
42158261 |
gattctaggctggacaccatcactgaggggcgaaccttggcgtctccacttatgtttgtgagtttacaacaattattgtcatttcgtctatccataaaca |
42158162 |
T |
|
| Q |
565 |
nnnnnnnnnnnnttcaactaatgctcttcagagttcagatacaatgattttgactatatatgaatggaacattgtattacactttttactcatttataac |
664 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42158161 |
aacaaacaaaaattcaactaatgctcttcagagttcagatacaatgattt-gactatatatgaatggaacattgtattacactttttactcatttataac |
42158063 |
T |
|
| Q |
665 |
tagctaacaaacttctaaaggagcacagattaccaaaacttctagctgaataaccaaatctacaacatgtcctaaattctaacggttctgttcaaaaaca |
764 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42158062 |
tagctaacaaacttctaaaggagcacagattaccaaaacttctagctgaataaccaaatctacaacatgtcctaaattctaacggttctgttcaaaaacg |
42157963 |
T |
|
| Q |
765 |
aaactctgctgctacaagatatatatcaatttgaaagtaaagatggataaaatttaaattaatgttttttagatacagagtttgactatctatggaatat |
864 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42157962 |
aaactctgctgctacaagatatatatcaatttgaaagtaaagatggataaaatttaaattaatgttttttagatacagagtttgactatctatggaatat |
42157863 |
T |
|
| Q |
865 |
tgtattagcgttctatggtaggactaataatagagatgattgggatgatagtc-aatacaccggtttgcattttgtaacataaaattcataactatataa |
963 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42157862 |
tgtattaacgttctatggtaggactaataatagagatgattgggatgatagtcaaatacaccggtttgcattttgtaacataaaattcataactatatga |
42157763 |
T |
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| Q |
964 |
taaa |
967 |
Q |
| |
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|||| |
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| T |
42157762 |
taaa |
42157759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 8 - 293
Target Start/End: Complemental strand, 42158745 - 42158450
Alignment:
| Q |
8 |
ttaagttacttgaagatcttcaccatacatttcgttttcgtggaccttggcttgactctcttgagattctcatgttcgagaatgctgcaaacgattctcg |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||| | |
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| T |
42158745 |
ttaagttacttgaagatcttcaccatacatttcgttttcgtggaccttggcttgattctcttaagattctcatgttcgagaatgctacaaacgattcttg |
42158646 |
T |
|
| Q |
108 |
caccttgaaaaaactgaggggacttgagaaagag-tttaagggctgtaatgatgaaatcatgcgtaaatggccgagaaagagtaaagg---------gac |
197 |
Q |
| |
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||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42158645 |
caccttgaaaaaactgaggggacttgagaaaaagttttaagggctgtaatgatgaaatcatgcgtaaatggccgagaaagagtaaagggactgggttgac |
42158546 |
T |
|
| Q |
198 |
tgggttgatgcaatcctttaggaaattggtcaaatatcatcttaagtatgttacggaagataggaaagctgtttccgatgccagaaagtctttgaa |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
42158545 |
tgggttgatgcaatcctttaggaaattggtcaaatatcatcttaaggttgttaccgaagataggaaagctgtttccgatgccagaaagtctttgaa |
42158450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 7e-18; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 960 - 1033
Target Start/End: Original strand, 4251232 - 4251307
Alignment:
| Q |
960 |
ataataaaggaaaatgcttaacatcgcgacaaaa-tttcacgaatatcacacaagaaaagctc-aaagcggtgatt |
1033 |
Q |
| |
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|||| |||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||| |||||||||||| |
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| T |
4251232 |
ataaaaaaggaaaatgcttaacatcgcaacaaaagtttcacgaatatcacacgagaaaagctcaaaagcggtgatt |
4251307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 968 - 1033
Target Start/End: Complemental strand, 10305613 - 10305546
Alignment:
| Q |
968 |
ggaaaatgcttaacatcgcgacaaaa-tttcacgaatatcacacaagaaaagctc-aaagcggtgatt |
1033 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||| |
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| T |
10305613 |
ggaaaatgcttaacatcgcgacaaaagtttcacgaatatcacacgagaaaagctcaaaagcggtgatt |
10305546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 968 - 1033
Target Start/End: Complemental strand, 51005434 - 51005367
Alignment:
| Q |
968 |
ggaaaatgcttaacatcgcgacaaaa-tttcacgaatatcacacaagaaaagctc-aaagcggtgatt |
1033 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||| |
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| T |
51005434 |
ggaaaatgcttaacatcgcgacaaaagtttcacgaatatcacacgagaaaagctcaaaagcggtgatt |
51005367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 966 - 1033
Target Start/End: Original strand, 4246071 - 4246140
Alignment:
| Q |
966 |
aaggaaaatgcttaacatcgcgacaaaa-tttcacgaatatcacacaagaaaagctc-aaagcggtgatt |
1033 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||| |
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| T |
4246071 |
aaggaaaatgcttaacatcgcgacaaaagtttcacgaatatcacatgagaaaagctcaaaagcggtgatt |
4246140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 966 - 1018
Target Start/End: Original strand, 1814022 - 1814075
Alignment:
| Q |
966 |
aaggaaaatgcttaacatcgcgacaaaa-tttcacgaatatcacacaagaaaag |
1018 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
1814022 |
aaggaaaatgcttaacatcgcgacaaaagtttcacgaatatcacacgagaaaag |
1814075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 964 - 1033
Target Start/End: Complemental strand, 143220 - 143149
Alignment:
| Q |
964 |
taaaggaaaatgcttaacatcgcgacaaaa-tttcacgaatatcacacaagaaaagctc-aaagcggtgatt |
1033 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||| | ||||||| || |||||||||||| |
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| T |
143220 |
taaaggaaaatgcttaacatcgcgacaaaagtttcacgaatatcatatgagaaaagttcaaaagcggtgatt |
143149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 968 - 1024
Target Start/End: Complemental strand, 13761685 - 13761628
Alignment:
| Q |
968 |
ggaaaatgcttaacatcgcgacaaaa-tttcacgaatatcacacaagaaaagctcaaa |
1024 |
Q |
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||||||||||||||||| |||||||| |||||| |||||||||| ||||||||||||| |
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| T |
13761685 |
ggaaaatgcttaacatcacgacaaaagtttcacaaatatcacacgagaaaagctcaaa |
13761628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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