View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5188-Insertion-2 (Length: 1023)
Name: NF5188-Insertion-2
Description: NF5188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5188-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 548; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 239 - 814
Target Start/End: Complemental strand, 50558918 - 50558343
Alignment:
| Q |
239 |
gattcaatggttttacactcatcttgcttactcctaaagcagaatttcaataatcgtcttttctcggtgtttttgtgtagataccatgctattcataagg |
338 |
Q |
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| T |
50558918 |
gattcaatggttttacactcatcttgcttactcctaaagcagaatttcaataatcgtcttttctcggtttttttgtgtagataccatgctattcataagg |
50558819 |
T |
|
| Q |
339 |
aggtctatgattggtttgatataagttttgataaatttgggcgaacctcttctcctgagcaaactgaaatttgccagtcaattttccaaaagatatttga |
438 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50558818 |
aggtctacgattggtttgatataagttttgataaatttgggcgaacctcttctcctgagcaaactgaaatttgccagtcaattttccaaaagatatttga |
50558719 |
T |
|
| Q |
439 |
taacaaatggatctccgagagaacaatggagcaggtgttcaattttctatttatttgacattgttcctctctcttgtttagttgaaaatttcagaaaggt |
538 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50558718 |
taacaaatggatctccgagagaacaatggagcaggtgttcaattttctatttatttgacattgttcctctctcttgtttagttgaaaatttcagaaaggt |
50558619 |
T |
|
| Q |
539 |
tctttattacgctttactaaaatgcttatcaaatttcagctttactgcaatacatgcgagaggttcttgtgtgatcggcttgtggaaggtgcctgtccaa |
638 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
50558618 |
tctttattacactttactaaaatgcttatcaaatttcagctttactgcgatacctgcgagaggttcttgtgtgatcggcttgtggaaggtacctgtccaa |
50558519 |
T |
|
| Q |
639 |
ctcctgggtgtgagtatggttctgcacgaggtgaccaatgcgataagtgtggaaagcttctcaatcctacagagttgaagaatcctaggtgcaaggtagc |
738 |
Q |
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| T |
50558518 |
ctcctgagtgtgagtatggttctgcacgaggtgaccaatgcgataagtgtggaaagcttctcaatcctacagagttgaagaatcctaggtgcaaggtagc |
50558419 |
T |
|
| Q |
739 |
aaccctctccctaaatttttgctctatgtttctgtgctgtatgtacgattttcattgtagtctatgttccttgcag |
814 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50558418 |
aaccctctccctaaatttttgctctatgtttctgtgctgtatgtacgattttcattgtagtctatgttccttgcag |
50558343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 8 - 208
Target Start/End: Complemental strand, 50559149 - 50558949
Alignment:
| Q |
8 |
gattctatttaaacaatttgttggttccgattctgattttgaacaggtgtattgagtgccgacgtttatgctcgttactgtcgacttaggggttacaatg |
107 |
Q |
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| T |
50559149 |
gattctatttaaacaatttgttggttccgattctgattttgaacaggtgtgttgagtgccgacgtttatgctcgttactgtcgacttaggggttacaatg |
50559050 |
T |
|
| Q |
108 |
ttctctacatttgtggtactgatgagtatggtactccaattattactagagctttggaacagaattgttctcctaaacaaattgctgacaagtactatca |
207 |
Q |
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| T |
50559049 |
ttctctacatttgtggtactgatgagtatggtactccaattgttactagagctttggaacagaattgttctcctaaacaaattgctgacaagtactatca |
50558950 |
T |
|
| Q |
208 |
a |
208 |
Q |
| |
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| |
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| T |
50558949 |
a |
50558949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 861 - 1023
Target Start/End: Complemental strand, 50558296 - 50558130
Alignment:
| Q |
861 |
gatactgtgtttaaatcacaattttttaagcacacatgtttatgcatttgtcattttttgaccactgtaacaggtttgtga-aaaagtcctcgtcttcgt |
959 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
50558296 |
gatactgtgtttaaatcacaattttttaagcacacatgtttatgcatttgtcgttttttgaccactgtaacaggtttgtgaaaaaagtcctcgtcttcgt |
50558197 |
T |
|
| Q |
960 |
gatacagaccacttatttcttgagcttcctctg-tcaaagat-aattgg-aaaatatgtcaacgaga |
1023 |
Q |
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| T |
50558196 |
gatacagaccacttatttcttgagcttcctctgttcaaagataaattggaaaaatatgtcaacgaga |
50558130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 316 - 429
Target Start/End: Complemental strand, 29773538 - 29773425
Alignment:
| Q |
316 |
tagataccatgctattcataaggaggtctatgattggtttgatataagttttgataaatttgggcgaacctcttctcctgagcaaactgaaatttgccag |
415 |
Q |
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|||||||||||||||||| ||||| ||||| |||||||| ||||||| |||||| ||||||| || || ||||| ||||||||||||||| | ||||| |
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| T |
29773538 |
tagataccatgctattcacaaggaagtctacgattggttcaatataagctttgatgaatttggacgtacttcttcccctgagcaaactgaagtgtgccaa |
29773439 |
T |
|
| Q |
416 |
tcaattttccaaaa |
429 |
Q |
| |
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|||||||| |||| |
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| T |
29773438 |
gcaattttcaaaaa |
29773425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 569 - 737
Target Start/End: Complemental strand, 29773236 - 29773068
Alignment:
| Q |
569 |
aaatttcagctttactgcaatacatgcgagaggttcttgtgtgatcggcttgtggaaggtgcctgtccaactcctgggtgtgagtatggttctgcacgag |
668 |
Q |
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|||||||||||||||||| |||||||| | |||||||| ||||| |||||||| ||| |||| |||| ||| ||||||||||||| |||||| ||| |
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| T |
29773236 |
aaatttcagctttactgcgatacatgcaaaaggttcttagccgatcgacttgtggagggtacctgcccaattccagggtgtgagtatgattctgccagag |
29773137 |
T |
|
| Q |
669 |
gtgaccaatgcgataagtgtggaaagcttctcaatcctacagagttgaagaatcctaggtgcaaggtag |
737 |
Q |
| |
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| || || || || || ||||| || ||||| ||||| ||||| ||||||| ||| | ||||||||||| |
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| T |
29773136 |
gggatcagtgtgagaactgtggcaaccttctaaatccgacagaattgaagattcccaagtgcaaggtag |
29773068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 925 - 989
Target Start/End: Complemental strand, 50568381 - 50568316
Alignment:
| Q |
925 |
ctgtaacaggtttgtgaaaa-agtcctcgtcttcgtgatacagaccacttatttcttgagcttcct |
989 |
Q |
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| T |
50568381 |
ctgtaacaggtttgtaaaaacagtccttttcttggtgatacagaccacttatttcttgagcttcct |
50568316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 926 - 991
Target Start/End: Complemental strand, 29770548 - 29770482
Alignment:
| Q |
926 |
tgtaacaggtttgt-gaaaaagtcctcgtcttcgtgatacagaccacttatttcttgagcttcctct |
991 |
Q |
| |
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| T |
29770548 |
tgtaacaggtttgtcgaaatagtcctcgtatttgtgatacggaccacttatttcttgagctccctct |
29770482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 201
Target Start/End: Complemental strand, 29774798 - 29774648
Alignment:
| Q |
51 |
caggtgtattgagtgccgacgtttatgctcgttactgtcgacttaggggttacaatgttctctacatttgtggtactgatgagtatggtactccaattat |
150 |
Q |
| |
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||||||| |||||||| || || | |||||| |||||||| |||||||||||||||| | ||||| |||||||| ||||||||||| ||| ||| |
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| T |
29774798 |
caggtgtgttgagtgctgatgtgtttgctcgatactgtcgtcttaggggttacaatgcgatttacatctgtggtaccgatgagtatgggactgcaacgga |
29774699 |
T |
|
| Q |
151 |
tactagagctttggaacagaattgttctcctaaacaaattgctgacaagta |
201 |
Q |
| |
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|||| ||| |||||| ||||||||||||| ||| | ||| ||||||||| |
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| T |
29774698 |
gactaaagcattggaagagaattgttctcccaaagagatttgtgacaagta |
29774648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 394 - 479
Target Start/End: Complemental strand, 50569065 - 50568978
Alignment:
| Q |
394 |
tgagcaaactgaaatttgccagtcaattttccaaaagata--tttgataacaaatggatctccgagagaacaatggagcaggtgttca |
479 |
Q |
| |
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||||| ||||||| ||||| || ||||||| |||||||| ||||||||||||||| | ||||||||||| ||||||||||||||| |
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| T |
50569065 |
tgagctaactgaagtttgcaaggaaattttcaaaaagataaatttgataacaaatggctatccgagagaaccgtggagcaggtgttca |
50568978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 309 - 342
Target Start/End: Complemental strand, 50569104 - 50569071
Alignment:
| Q |
309 |
ttttgtgtagataccatgctattcataaggaggt |
342 |
Q |
| |
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||||||||||||||||||||||| |||||||||| |
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| T |
50569104 |
ttttgtgtagataccatgctattaataaggaggt |
50569071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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