View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5188-Insertion-3 (Length: 1001)
Name: NF5188-Insertion-3
Description: NF5188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5188-Insertion-3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 879; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 879; E-Value: 0
Query Start/End: Original strand, 8 - 994
Target Start/End: Original strand, 48482788 - 48483786
Alignment:
| Q |
8 |
gagaacactacaagcaaccaacgaccttttgtaggtaagtagtcttgtatgattatattaagaattggattagctgataaattgttttacaagtttttcc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48482788 |
gagaacactacaagcaaccaacgaccttttgtaggtaagtagtcttgtatgattatattaagaattggattagctgataaattgttttacaagtttttcc |
48482887 |
T |
|
| Q |
108 |
aaaatacaaggacgagaaatatgatattgcatctaaaatctatttctttcttgttattgcaaccaaaggcatgtatgatgaaagcaccaaa-----acag |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
48482888 |
aaaatacaaggacgagaaatatgatattgcatctaaaatctatttctttcttgttattgcaaccaaaggcatgtatgatgaaagcaccaaagaatcacag |
48482987 |
T |
|
| Q |
203 |
atgtagcagtgtcttctgaattgatggttgctcctgctccaaagcggtcctcaaactgacttgctagcaagaaaccggttgtcgtgtctaacggaagagc |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48482988 |
atgtagcagtgtcttctgaattgatggttgctcctgctccaaagcggtcctcaaactgacttgctagcaagaaaccggttgtcgtgtctaacggaagagc |
48483087 |
T |
|
| Q |
303 |
actccagcatgcataaaaatcatgcattgagatatttgggactacattggtggatttttatatactttataggctaaactgacggactttatatagttta |
402 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48483088 |
actcaagcatgcataaaaatcatgcattgagatatttgggactacattggtggatttttatatactttataggctaaactgacggactttatatagttta |
48483187 |
T |
|
| Q |
403 |
aggactatttagtatattttataatgtagggattaaattgaagagtgatagtttagagattaaattgatagtttattcttgaattataccgtaatctata |
502 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
48483188 |
aggactatttaatatattttataatgtagggattaaattgaagagtgatagtttagagattaaattgatggtttattcttgaattatacagtaatctata |
48483287 |
T |
|
| Q |
503 |
atgaattcttaaattatgcagtaatctacgacgaatgatgatgatatctcgagcaacttccctccttcggttagtattgctcggcatttggttcctaata |
602 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48483288 |
atgaattcttaaattatgcagtaatctacgacgaatgatgatgatatctcgagcaacttccctccttcggttagtattgctcggcatttggttcctaata |
48483387 |
T |
|
| Q |
603 |
attttctaatcttggattgatgggtccaataacaaatagtaacaaaccacactaatattcacacccaaaacaacacaaaaattgcattaacaaaatgctt |
702 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
48483388 |
attttctaatcttggattaatgggtccaataacaaatagtaacaaacgacactaatattcacacccaaaacaacacaaaaattgctttaacaaaatgctt |
48483487 |
T |
|
| Q |
703 |
ctccattaaattacatcttccgagactaaatgactcgtggagaataattataggacacaagaaaatataccaataccatgatccagcacactatgtccaa |
802 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
48483488 |
ctccattaaattacatcttccgagactaaatgactcgtggagaataattataggaaacaagaaaatataccaataccatgatccggcagactatgtccaa |
48483587 |
T |
|
| Q |
803 |
taacaaattgt-aaaaagttatgcatgtcacttaaaactttattggaaaattggaatacaaaaaagattaaagattcacctcattaa-ggggtatgtttt |
900 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
48483588 |
taacaaattgtaaaaaagttatgcatgtcacttaaaactttattggaaaattggaagacaaaaaagattaaagattcacctcattaagggggtatgtttt |
48483687 |
T |
|
| Q |
901 |
aatacacctc-accaattattatacgagtaaactttgcct-gtgat-aatttgtcacgaccatgct-cctttat-atgtagtctcattttggaattctg |
994 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
48483688 |
aatacacctcaaccaattattatacgagtaaactttgcctggtgataaatttgtcacgaccatgctccctttataatgtagtctcattttggaattctg |
48483786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 447 - 482
Target Start/End: Complemental strand, 14198247 - 14198212
Alignment:
| Q |
447 |
gtgatagtttagagattaaattgatagtttattctt |
482 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14198247 |
gtgatagtttagagattaaattgatcgtttattctt |
14198212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 376 - 442
Target Start/End: Complemental strand, 47665009 - 47664942
Alignment:
| Q |
376 |
ctaaactgacggactttatatagtttaaggactatttagtata-ttttataatgtagggattaaattg |
442 |
Q |
| |
|
||||| ||||||| |||||||||||| | |||||||| ||||| ||||||| | |||||||||||||| |
|
|
| T |
47665009 |
ctaaattgacggattttatatagtttgaagactatttggtatatttttatagtatagggattaaattg |
47664942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University