View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5188-Insertion-4 (Length: 205)

Name: NF5188-Insertion-4
Description: NF5188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5188-Insertion-4
NF5188-Insertion-4
[»] chr3 (26 HSPs)
chr3 (8-205)||(8067884-8068081)
chr3 (8-156)||(41457404-41457555)
chr3 (8-60)||(51166551-51166603)
chr3 (8-60)||(55273622-55273674)
chr3 (15-61)||(37821763-37821809)
chr3 (8-57)||(33584041-33584090)
chr3 (8-60)||(2446641-2446693)
chr3 (8-60)||(10660298-10660350)
chr3 (8-60)||(23151565-23151617)
chr3 (8-60)||(51755090-51755142)
chr3 (10-60)||(44378710-44378760)
chr3 (8-57)||(1545364-1545413)
chr3 (8-57)||(5272870-5272919)
chr3 (8-57)||(20607038-20607087)
chr3 (8-57)||(27450112-27450161)
chr3 (8-57)||(46529228-46529277)
chr3 (8-60)||(8827697-8827749)
chr3 (8-60)||(38253257-38253309)
chr3 (8-60)||(43972222-43972274)
chr3 (17-60)||(3020010-3020053)
chr3 (15-57)||(26974901-26974943)
chr3 (15-60)||(10470740-10470785)
chr3 (8-57)||(24406508-24406557)
chr3 (8-57)||(37125942-37125991)
chr3 (15-57)||(24349937-24349979)
chr3 (24-60)||(8066256-8066292)
[»] chr2 (10 HSPs)
chr2 (8-205)||(39429262-39429459)
chr2 (8-60)||(2358076-2358128)
chr2 (8-60)||(26479119-26479171)
chr2 (14-60)||(21866552-21866598)
chr2 (12-60)||(31546630-31546678)
chr2 (15-60)||(1221760-1221805)
chr2 (8-57)||(2371428-2371477)
chr2 (8-57)||(14286644-14286693)
chr2 (8-57)||(30786635-30786684)
chr2 (32-60)||(20115802-20115830)
[»] chr1 (25 HSPs)
chr1 (8-152)||(48541937-48542082)
chr1 (106-205)||(44054046-44054145)
chr1 (9-156)||(18605844-18605994)
chr1 (8-136)||(17925026-17925154)
chr1 (8-136)||(49740533-49740660)
chr1 (8-73)||(44053982-44054047)
chr1 (8-60)||(15475315-15475367)
chr1 (12-60)||(46233651-46233699)
chr1 (8-57)||(29033157-29033206)
chr1 (15-60)||(37093248-37093293)
chr1 (8-57)||(50501424-50501473)
chr1 (12-60)||(3047541-3047589)
chr1 (9-57)||(3994432-3994480)
chr1 (8-60)||(8896248-8896300)
chr1 (8-60)||(15910411-15910463)
chr1 (12-60)||(49457526-49457574)
chr1 (8-57)||(6979415-6979464)
chr1 (8-60)||(28225586-28225638)
chr1 (15-60)||(43106146-43106191)
chr1 (15-57)||(11335086-11335128)
chr1 (15-57)||(11493106-11493148)
chr1 (14-60)||(28068327-28068373)
chr1 (8-57)||(42885597-42885647)
chr1 (15-57)||(52468932-52468974)
chr1 (8-60)||(3771243-3771295)
[»] scaffold0081 (1 HSPs)
scaffold0081 (8-156)||(12101-12252)
[»] chr4 (19 HSPs)
chr4 (17-156)||(44878885-44879027)
chr4 (8-156)||(11309885-11310033)
chr4 (19-136)||(11379934-11380051)
chr4 (8-61)||(7553512-7553565)
chr4 (8-57)||(50622393-50622442)
chr4 (8-56)||(3931001-3931049)
chr4 (8-60)||(55281661-55281713)
chr4 (14-60)||(39677113-39677159)
chr4 (12-57)||(36224480-36224525)
chr4 (8-60)||(33115449-33115501)
chr4 (102-180)||(3931060-3931139)
chr4 (11-57)||(3874927-3874973)
chr4 (14-60)||(45885711-45885757)
chr4 (15-60)||(7326942-7326987)
chr4 (8-57)||(28867046-28867095)
chr4 (8-57)||(29924272-29924321)
chr4 (8-52)||(24744402-24744446)
chr4 (15-57)||(36431765-36431807)
chr4 (8-42)||(41763484-41763518)
[»] scaffold0548 (1 HSPs)
scaffold0548 (8-156)||(8369-8517)
[»] chr7 (17 HSPs)
chr7 (12-156)||(3111209-3111356)
chr7 (15-130)||(35598477-35598594)
chr7 (8-60)||(38742513-38742565)
chr7 (8-60)||(41118025-41118077)
chr7 (8-57)||(5543608-5543657)
chr7 (8-57)||(31622660-31622709)
chr7 (8-60)||(25105888-25105940)
chr7 (8-60)||(44509497-44509549)
chr7 (8-60)||(47019894-47019946)
chr7 (8-60)||(47455754-47455806)
chr7 (8-57)||(44291831-44291880)
chr7 (8-60)||(31587151-31587203)
chr7 (8-57)||(12849062-12849111)
chr7 (8-57)||(40186010-40186059)
chr7 (16-60)||(9740584-9740628)
chr7 (23-60)||(18675918-18675955)
chr7 (8-60)||(27902766-27902816)
[»] chr8 (14 HSPs)
chr8 (14-156)||(1103894-1104039)
chr8 (27-136)||(5459184-5459293)
chr8 (8-57)||(482454-482503)
chr8 (8-57)||(35392866-35392915)
chr8 (8-60)||(29998381-29998433)
chr8 (8-60)||(30656580-30656632)
chr8 (12-60)||(32834887-32834935)
chr8 (8-57)||(20188250-20188299)
chr8 (8-57)||(20207319-20207368)
chr8 (8-57)||(30699356-30699405)
chr8 (15-60)||(36782268-36782313)
chr8 (8-60)||(12987471-12987523)
chr8 (8-60)||(24757293-24757345)
chr8 (8-60)||(31097975-31098027)
[»] chr5 (15 HSPs)
chr5 (8-136)||(33569340-33569468)
chr5 (13-61)||(11255331-11255379)
chr5 (8-57)||(6230986-6231035)
chr5 (12-60)||(8336132-8336180)
chr5 (8-60)||(29296918-29296970)
chr5 (14-60)||(10691357-10691403)
chr5 (14-60)||(31377569-31377615)
chr5 (15-60)||(8835874-8835919)
chr5 (8-57)||(25032046-25032095)
chr5 (8-60)||(18618137-18618189)
chr5 (8-60)||(33591307-33591359)
chr5 (8-60)||(42674861-42674913)
chr5 (8-61)||(8781528-8781581)
chr5 (15-57)||(41742822-41742864)
chr5 (15-60)||(15471999-15472044)
[»] scaffold0041 (1 HSPs)
scaffold0041 (8-60)||(104911-104963)
[»] chr6 (7 HSPs)
chr6 (8-60)||(18676064-18676116)
chr6 (8-60)||(742228-742280)
chr6 (8-60)||(10791116-10791167)
chr6 (8-60)||(33490375-33490427)
chr6 (12-57)||(8063568-8063613)
chr6 (8-60)||(34476349-34476401)
chr6 (14-57)||(28913540-28913583)
[»] scaffold1360 (2 HSPs)
scaffold1360 (8-56)||(381-429)
scaffold1360 (102-180)||(440-519)
[»] scaffold0057 (1 HSPs)
scaffold0057 (8-57)||(42052-42101)
[»] scaffold0562 (1 HSPs)
scaffold0562 (11-57)||(5746-5792)


Alignment Details
Target: chr3 (Bit Score: 174; Significance: 8e-94; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 8067884 - 8068081
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaataaatcatttcattcatcgcttaatcactgaaacctggaaacgtaat 107  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8067884 acaccccagaatgactaatataccctttaactaaaataaaaatttcaaattaataaatcatttcatccatcgcttaatcactgaaacctggaaacgtaat 8067983  T
Q  108 cctaattcatgtattcctctttccaaacattcacaccgcgtttttgaaagctatcgctctttctcatcaaactcgctcgctcgccgcatctccaccat 205  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  8067984 cctaattcatgtattcctctttccaaacactcacaccgcgtttttgaaagatatctctctttctcatcaaactcgctcgctcgccgcatctccaccat 8068081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 156
Target Start/End: Complemental strand, 41457555 - 41457404
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaat---aaatcatttcattcatcgcttaatcactgaaacctggaaacgt 104  Q
    |||||||| ||||||||||||| | |||||||||||||||||||| ||||||||   ||||  |||||| |||||||||||||| ||||| |||||||||    
T  41457555 acaccccataatgactaatatatcctttaactaaaataaaaatttcaaattaatctaaaattctttcatccatcgcttaatcaccgaaacttggaaacgt 41457456  T
Q  105 aatcctaattcatgtattcctctttccaaacattcacaccgcgtttttgaaa 156  Q
    || ||||||||| ||||||||| ||||||||| |||||||  ||||||||||    
T  41457455 aaacctaattcacgtattcctccttccaaacactcacaccatgtttttgaaa 41457404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 51166551 - 51166603
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  51166551 acaccccagaatgactaatataccctttaactaaaataaaaatttcaaattaa 51166603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 55273622 - 55273674
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  55273622 acacctcagaatgactaatataccttttaactaaaataaaaatttcaaattaa 55273674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 37821809 - 37821763
Alignment:
Q  15 agaatgactaatataccttttaactaaaataaaaattttaaattaat 61  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  37821809 agaatgactaatataccctttaactaaaataaaaattttaaattaat 37821763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 33584090 - 33584041
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaat 57  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  33584090 acaccccagaatgactaatataccctttaactaaaataaaaatttcaaat 33584041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 2446693 - 2446641
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||| ||||||||||||||||||| |||||||||||||||||||| |||||||    
T  2446693 acactccagaatgactaatataccctttaactaaaataaaaatttcaaattaa 2446641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 10660350 - 10660298
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||||| ||||||||||||||||| |||||||||||||||||||| |||||||    
T  10660350 acaccctagaatgactaatataccctttaactaaaataaaaatttcaaattaa 10660298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 23151617 - 23151565
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||||||||||||||||||||||| ||||| |||||||||||||| |||||||    
T  23151617 acaccccagaatgactaatataccctttaattaaaataaaaatttcaaattaa 23151565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 51755142 - 51755090
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||||||||||||| ||||||||| |||||||||||||||||||| |||||||    
T  51755142 acaccccagaatgattaatataccctttaactaaaataaaaatttcaaattaa 51755090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 44378760 - 44378710
Alignment:
Q  10 accccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||||||||||| ||||||||| |||||||||||||||||||| |||||||    
T  44378760 accccagaatgattaatataccctttaactaaaataaaaatttcaaattaa 44378710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 1545364 - 1545413
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaat 57  Q
    |||||||||||||||||||||||| |||||||||||||||| ||| ||||    
T  1545364 acaccccagaatgactaatataccctttaactaaaataaaattttcaaat 1545413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 5272870 - 5272919
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaat 57  Q
    |||| ||||||||||||||||||| |||||||||||||||||||| ||||    
T  5272870 acactccagaatgactaatataccctttaactaaaataaaaatttcaaat 5272919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 20607038 - 20607087
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaat 57  Q
    |||||| ||||||||||||||||| |||||||||||||||||||| ||||    
T  20607038 acacccgagaatgactaatataccctttaactaaaataaaaatttcaaat 20607087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 27450161 - 27450112
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaat 57  Q
    |||||| ||||||||||||||||| |||||||||||||||||||| ||||    
T  27450161 acaccctagaatgactaatataccctttaactaaaataaaaatttcaaat 27450112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 46529277 - 46529228
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaat 57  Q
    |||| ||||||||||||||||||| |||||||||||||||||||| ||||    
T  46529277 acactccagaatgactaatataccctttaactaaaataaaaatttcaaat 46529228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 8827697 - 8827749
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||| ||||||||||||||||||| ||||| |||||||||||||| |||||||    
T  8827697 acactccagaatgactaatataccctttaattaaaataaaaatttcaaattaa 8827749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 38253309 - 38253257
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||||||| ||||||||||||||| ||||| |||||||||||||| |||||||    
T  38253309 acaccccaaaatgactaatataccctttaaataaaataaaaatttcaaattaa 38253257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 43972222 - 43972274
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    ||||| |||||||||||||||||| ||||||||| |||||||||| |||||||    
T  43972222 acacctcagaatgactaatataccatttaactaagataaaaatttcaaattaa 43972274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 3020053 - 3020010
Alignment:
Q  17 aatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    ||||||||||||||| |||||||||||||||||||| |||||||    
T  3020053 aatgactaatataccctttaactaaaataaaaatttcaaattaa 3020010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 26974901 - 26974943
Alignment:
Q  15 agaatgactaatataccttttaactaaaataaaaattttaaat 57  Q
    ||||||||||||||| |||||||||||||||||||||| ||||    
T  26974901 agaatgactaatatatcttttaactaaaataaaaatttcaaat 26974943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 10470740 - 10470785
Alignment:
Q  15 agaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    ||||||| ||||||| |||| |||||||||||||||||||||||||    
T  10470740 agaatgattaatatatctttgaactaaaataaaaattttaaattaa 10470785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 24406557 - 24406508
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaat 57  Q
    |||||| | ||||||||||||||| |||||||||||||||||||| ||||    
T  24406557 acacccaataatgactaatataccatttaactaaaataaaaatttcaaat 24406508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 37125942 - 37125991
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaat 57  Q
    |||| ||| ||||||||||||||| |||||||||||||||||||| ||||    
T  37125942 acactccaaaatgactaatataccctttaactaaaataaaaatttcaaat 37125991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 24349979 - 24349937
Alignment:
Q  15 agaatgactaatataccttttaactaaaataaaaattttaaat 57  Q
    ||||||| ||||||||| |||||||||||||||||||| ||||    
T  24349979 agaatgattaatataccctttaactaaaataaaaatttcaaat 24349937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 8066292 - 8066256
Alignment:
Q  24 aatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||||||| |||||||||||||||||||| |||||||    
T  8066292 aatataccctttaactaaaataaaaatttcaaattaa 8066256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 39429262 - 39429459
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaataaatcatttcattcatcgcttaatcactgaaacctggaaacgtaat 107  Q
    |||| ||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39429262 acactccagaatgactaatataccctttaattaaaataaaaatttcaaattaataaatcatttcattcatcgcttaatcactgaaacctggaaacataat 39429361  T
Q  108 cctaattcatgtattcctctttccaaacattcacaccgcgtttttgaaagctatcgctctttctcatcaaactcgctcgctcgccgcatctccaccat 205  Q
    | ||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39429362 cataattcatgtattcctctttccaaacactcacaccgtgtttttgaaagctatctctctttctcatcaaactcgctcgctcgccgcatctccaccat 39429459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 2358128 - 2358076
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  2358128 acaccccagaatgactaatataccctttaactaaaataaaaatttcaaattaa 2358076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 26479119 - 26479171
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  26479119 acaccccagaatgactaatataccctttaactaaaataaaaatttcaaattaa 26479171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 21866552 - 21866598
Alignment:
Q  14 cagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  21866552 cagaatgactaatataccctttaactaaaataaaaattttaaattaa 21866598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 31546630 - 31546678
Alignment:
Q  12 cccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||    
T  31546630 cccagaatgactaatataccctttaactaaaataaaaatttcaaattaa 31546678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 1221760 - 1221805
Alignment:
Q  15 agaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||    
T  1221760 agaatgactaatataccctttaactaaaataaaaatttcaaattaa 1221805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 2371428 - 2371477
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaat 57  Q
    |||| ||||||||||||||||||| |||||||||||||||||||| ||||    
T  2371428 acactccagaatgactaatataccctttaactaaaataaaaatttcaaat 2371477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 14286644 - 14286693
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaat 57  Q
    |||||||||||||||||||||||| ||||| |||||||||||||| ||||    
T  14286644 acaccccagaatgactaatataccctttaattaaaataaaaatttcaaat 14286693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 30786635 - 30786684
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaat 57  Q
    ||||| |||||||||||||||||| |||||||||||||||||||| ||||    
T  30786635 acacctcagaatgactaatataccctttaactaaaataaaaatttcaaat 30786684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 60
Target Start/End: Complemental strand, 20115830 - 20115802
Alignment:
Q  32 ttttaactaaaataaaaattttaaattaa 60  Q
    |||||||||||||||||||||||||||||    
T  20115830 ttttaactaaaataaaaattttaaattaa 20115802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 7e-51; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 8 - 152
Target Start/End: Original strand, 48541937 - 48542082
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaataaatcatttcattcatcgcttaatcactgaaacctg-gaaacgtaa 106  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||  |||||||||||||  |||||||  ||||||||    
T  48541937 acaccccagaatgactaatataccctttaactaaaataaaaatttcaaattaataaatcatttcatctatcgcttaatcaccaaaacctgaaaaacgtaa 48542036  T
Q  107 tcctaattcatgtattcctctttccaaacattcacaccgcgttttt 152  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||    
T  48542037 tcctaattcacgtattcctctttccaaacactcacaccgcgttttt 48542082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 106 - 205
Target Start/End: Original strand, 44054046 - 44054145
Alignment:
Q  106 atcctaattcatgtattcctctttccaaacattcacaccgcgtttttgaaagctatcgctctttctcatcaaactcgctcgctcgccgcatctccaccat 205  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44054046 atcctaattcatgtattcctctttccaaacactcacaccgtgtttttgaaagctatcgctctttctcatcaaactcgctcgctcgccgcatctccaccat 44054145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 9 - 156
Target Start/End: Complemental strand, 18605994 - 18605844
Alignment:
Q  9 caccccagaatgactaatataccttttaactaaaataaaaattttaaattaat---aaatcatttcattcatcgcttaatcactgaaacctggaaacgta 105  Q
    ||||||| ||||||||||||||| || ||||||||||||||||| ||||||||   ||||  |||||| |||||||||||||||||||| ||||||||||    
T  18605994 caccccataatgactaatatacccttgaactaaaataaaaatttcaaattaatctaaaattctttcatccatcgcttaatcactgaaacttggaaacgta 18605895  T
Q  106 atcctaattcatgtattcctctttccaaacattcacaccgcgtttttgaaa 156  Q
    | ||||||||| |||||||||  |||||||| || ||||| ||||||||||    
T  18605894 aacctaattcacgtattcctccatccaaacactcgcaccgtgtttttgaaa 18605844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 17925026 - 17925154
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaat---aaatcatttcattcatcgcttaatcactgaaacctggaaacgt 104  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||   ||||| |||||| ||||||||||||| ||||||||   |||||    
T  17925026 acaccccagattgactaatataccctttaactaaaataaaaattttaaattaatctaaaatcctttcatccatcgcttaatcattgaaacct---aacgt 17925122  T
Q  105 aatcctaattcatgtattcctctttccaaaca 136  Q
    || |||||||||  |||| ||| |||||||||    
T  17925123 aaacctaattcacatatttctccttccaaaca 17925154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 8 - 136
Target Start/End: Complemental strand, 49740660 - 49740533
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaat---aaatcatttcattcatcgcttaatcactgaaacctggaaacgt 104  Q
    |||||||||| ||||||||||||| |||||||||||||||||||| ||||||||   ||||| |||||| || |||||||||||||||||||   |||||    
T  49740660 acaccccagactgactaatataccctttaactaaaataaaaatttcaaattaatctaaaatcctttcatcca-cgcttaatcactgaaacct---aacgt 49740565  T
Q  105 aatcctaattcatgtattcctctttccaaaca 136  Q
    || |||||||||  |||||||| |||||||||    
T  49740564 aaacctaattcagatattcctccttccaaaca 49740533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 44053982 - 44054047
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaataaatcatttcat 73  Q
    |||||| | ||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||    
T  44053982 acaccctaaaatgactaatataccctttaattaaaataaaaatttcaaattaataaatcatttcat 44054047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 15475315 - 15475367
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  15475315 acaccccagaatgactaatataccctttaactaaaataaaaatttcaaattaa 15475367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 46233651 - 46233699
Alignment:
Q  12 cccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  46233651 cccagaatgactaatataccttttaactaaaataaaaatttcaaattaa 46233699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 29033157 - 29033206
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaat 57  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  29033157 acaccccagaatgactaatataccctttaactaaaataaaaatttcaaat 29033206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 37093248 - 37093293
Alignment:
Q  15 agaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  37093248 agaatgactaatataccctttaactaaaataaaaattttaaattaa 37093293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 50501473 - 50501424
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaat 57  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  50501473 acaccccagaatgactaatataccctttaactaaaataaaaatttcaaat 50501424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 3047589 - 3047541
Alignment:
Q  12 cccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||    
T  3047589 cccagaatgactaatataccctttaactaaaataaaaatttaaaattaa 3047541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 3994432 - 3994480
Alignment:
Q  9 caccccagaatgactaatataccttttaactaaaataaaaattttaaat 57  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  3994432 caccccagaatgactaatataccctttaattaaaataaaaattttaaat 3994480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 8896300 - 8896248
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    ||||| |||||||||||||||||| |||||||||||||||||||| |||||||    
T  8896300 acacctcagaatgactaatataccctttaactaaaataaaaatttcaaattaa 8896248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 15910463 - 15910411
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||| ||||||||||||||||||| |||||||||||||||||||| |||||||    
T  15910463 acactccagaatgactaatataccctttaactaaaataaaaatttcaaattaa 15910411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 49457574 - 49457526
Alignment:
Q  12 cccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||    
T  49457574 cccagaatgactaatataccctttaactaaaataaaaatttcaaattaa 49457526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 6979464 - 6979415
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaat 57  Q
    |||||||| ||||||||||||||| |||||||||||||||||||| ||||    
T  6979464 acaccccaaaatgactaatataccctttaactaaaataaaaatttaaaat 6979415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 28225586 - 28225638
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||||| ||||||||||||||| | ||||| ||||||||||||||||||||||    
T  28225586 acaccctagaatgactaatatatcctttaattaaaataaaaattttaaattaa 28225638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 43106146 - 43106191
Alignment:
Q  15 agaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    ||||||||||||||| ||||||| |||||||||||||| |||||||    
T  43106146 agaatgactaatatatcttttaattaaaataaaaatttcaaattaa 43106191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 11335086 - 11335128
Alignment:
Q  15 agaatgactaatataccttttaactaaaataaaaattttaaat 57  Q
    ||||||||||||||| | |||||||||||||||||||| ||||    
T  11335086 agaatgactaatatatcctttaactaaaataaaaatttcaaat 11335128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 11493106 - 11493148
Alignment:
Q  15 agaatgactaatataccttttaactaaaataaaaattttaaat 57  Q
    ||||||||||||||| | |||||||||||||||||||| ||||    
T  11493106 agaatgactaatatatcctttaactaaaataaaaatttcaaat 11493148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 28068327 - 28068373
Alignment:
Q  14 cagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||||||||||||||||| ||||| |||||| ||||||| |||||||    
T  28068327 cagaatgactaatataccctttaattaaaattaaaatttcaaattaa 28068373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 42885647 - 42885597
Alignment:
Q  8 acaccccagaat-gactaatataccttttaactaaaataaaaattttaaat 57  Q
    |||||||||||| |||||||||||  |||||||||||||||||||| ||||    
T  42885647 acaccccagaattgactaatatactctttaactaaaataaaaatttcaaat 42885597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 52468932 - 52468974
Alignment:
Q  15 agaatgactaatataccttttaactaaaataaaaattttaaat 57  Q
    ||||||| ||||||||| |||||||||||||||||||| ||||    
T  52468932 agaatgattaatataccctttaactaaaataaaaatttcaaat 52468974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 3771295 - 3771243
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||||| |||||| |||||||| | ||||||||||||| |||||| |||||||    
T  3771295 acaccctagaatggctaatatatcctttaactaaaatagaaatttcaaattaa 3771243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 82; Significance: 6e-39; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 8 - 156
Target Start/End: Complemental strand, 12252 - 12101
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaat---aaatcatttcattcatcgcttaatcactgaaacctggaaacgt 104  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||   || |  |||||| |||||||||||||| ||||| |||||||||    
T  12252 acaccccagaatgactaatataccctttaactaaaataaaatttttaaattaatctaaatttctttcatccatcgcttaatcaccgaaacttggaaacgt 12153  T
Q  105 aatcctaattcatgtattcctctttccaaacattcacaccgcgtttttgaaa 156  Q
    || ||||||||| ||||||||| ||||||||| |||||||| |||| |||||    
T  12152 aaacctaattcacgtattcctccttccaaacactcacaccgtgtttctgaaa 12101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 44879027 - 44878885
Alignment:
Q  17 aatgactaatataccttttaactaaaataaaaattttaaattaat---aaatcatttcattcatcgcttaatcactgaaacctggaaacgtaatcctaat 113  Q
    ||||||||||||||| |||||||||||||||||||||||||||||   ||||| ||| || ||||||||||||||| ||||||  |||||||| ||||||    
T  44879027 aatgactaatataccctttaactaaaataaaaattttaaattaatttaaaatcctttaatccatcgcttaatcactaaaacctaaaaacgtaaacctaat 44878928  T
Q  114 tcatgtattcctctttccaaacattcacaccgcgtttttgaaa 156  Q
    |||  |||||||||||||||||| |||||||| ||||||||||    
T  44878927 tcacatattcctctttccaaacactcacaccgtgtttttgaaa 44878885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 8 - 156
Target Start/End: Complemental strand, 11310033 - 11309885
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaat---aaatcatttcattcatcgcttaatcactgaaacctggaaacgt 104  Q
    |||||||||| ||||||||||||| |||||||||||||||||||| ||||||||   ||||| |||||| ||||||||||||||||||||||   |||||    
T  11310033 acaccccagactgactaatataccctttaactaaaataaaaatttcaaattaatctaaaatcctttcatccatcgcttaatcactgaaacct---aacgt 11309937  T
Q  105 aatcctaattcatgtattcctctttccaaacattcacaccgcgtttttgaaa 156  Q
    || |||||||||  |||||||| |||||||||  ||||||| ||||||||||    
T  11309936 aaacctaattcacttattcctccttccaaacacacacaccgtgtttttgaaa 11309885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 11379934 - 11380051
Alignment:
Q  19 tgactaatataccttttaactaaaataaaaattttaaattaat---aaatcatttcattcatcgcttaatcactgaaacctggaaacgtaatcctaattc 115  Q
    ||||||||||| | |||||||||||||||||||| ||||||||   ||||  |||||| ||||||||||||||||||||||   ||||||| ||||||||    
T  11379934 tgactaatatatcctttaactaaaataaaaatttcaaattaatctaaaattctttcatccatcgcttaatcactgaaacct---aacgtaaacctaattc 11380030  T
Q  116 atgtattcctctttccaaaca 136  Q
    |  |||||||| || ||||||    
T  11380031 acatattcctcctttcaaaca 11380051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 7553512 - 7553565
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaat 61  Q
    ||||| |||||||||||||||||| |||||||||||||||||||| ||||||||    
T  7553512 acacctcagaatgactaatataccctttaactaaaataaaaatttcaaattaat 7553565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 50622442 - 50622393
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaat 57  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  50622442 acaccccagaatgactaatataccctttaactaaaataaaaatttcaaat 50622393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 3931001 - 3931049
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaa 56  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  3931001 acactccagaatgactaatataccctttaactaaaataaaaattttaaa 3931049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 55281661 - 55281713
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||||||||||||| ||||||||| |||||||||||||||||||| |||||||    
T  55281661 acaccccagaatgattaatataccctttaactaaaataaaaatttcaaattaa 55281713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 39677113 - 39677159
Alignment:
Q  14 cagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||    
T  39677113 cagaatgactaatataccctttaactaaaataaaaatttcaaattaa 39677159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 36224480 - 36224525
Alignment:
Q  12 cccagaatgactaatataccttttaactaaaataaaaattttaaat 57  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||    
T  36224480 cccagaatgactaatataccctttaactaaaataaaaatttcaaat 36224525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 33115449 - 33115501
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||||||||||||||||||||||  |||||||||||||| ||||| |||||||    
T  33115449 acaccccagaatgactaatatacactttaactaaaataagaatttcaaattaa 33115501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 180
Target Start/End: Original strand, 3931060 - 3931139
Alignment:
Q  102 cgtaatcctaattcatgtattcctctttccaaacattcacaccgcgt-ttttgaaagctatcgctctttctcatcaaact 180  Q
    ||||||| ||||||| ||||||||||||||||||| ||||||| | |  ||| | ||||||| |||||||||||||||||    
T  3931060 cgtaatcataattcacgtattcctctttccaaacactcacaccacttcgttttagagctatcactctttctcatcaaact 3931139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 3874927 - 3874973
Alignment:
Q  11 ccccagaatgactaatataccttttaactaaaataaaaattttaaat 57  Q
    ||||||||||||||||||| | |||||||||||||||||||| ||||    
T  3874927 ccccagaatgactaatatatcctttaactaaaataaaaatttcaaat 3874973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 45885757 - 45885711
Alignment:
Q  14 cagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||||||||||||||||  |||||||||||||||||||| |||||||    
T  45885757 cagaatgactaatatactctttaactaaaataaaaatttcaaattaa 45885711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 7326942 - 7326987
Alignment:
Q  15 agaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    ||||||| ||||||||| |||||||||||||||||||| |||||||    
T  7326942 agaatgattaatataccctttaactaaaataaaaatttcaaattaa 7326987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 28867046 - 28867095
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaat 57  Q
    |||||||| ||||||||||||||| |||||||||||||| ||||| ||||    
T  28867046 acaccccataatgactaatataccctttaactaaaataacaatttcaaat 28867095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 29924321 - 29924272
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaat 57  Q
    |||||||||||||| ||||||||| ||||| |||||||||||||| ||||    
T  29924321 acaccccagaatgattaatataccctttaattaaaataaaaatttcaaat 29924272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 24744402 - 24744446
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattt 52  Q
    |||| ||||||||| ||||||||| ||||||||||||||||||||    
T  24744402 acactccagaatgattaatataccctttaactaaaataaaaattt 24744446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 36431765 - 36431807
Alignment:
Q  15 agaatgactaatataccttttaactaaaataaaaattttaaat 57  Q
    ||||||||||||||||  |||||||||||||||||||| ||||    
T  36431765 agaatgactaatatactctttaactaaaataaaaatttcaaat 36431807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 41763484 - 41763518
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaa 42  Q
    |||||||||||||||||||||||| ||||||||||    
T  41763484 acaccccagaatgactaatataccctttaactaaa 41763518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 76; Significance: 2e-35; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 8369 - 8517
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaat---aaatcatttcattcatcgcttaatcactgaaacctggaaacgt 104  Q
    |||||||||| ||||||||||||| |||||||||||||||||||| ||||||||   ||||| |||||| ||||||||||||||||||||||   |||||    
T  8369 acaccccagactgactaatataccctttaactaaaataaaaatttcaaattaatctaaaatcctttcatccatcgcttaatcactgaaacct---aacgt 8465  T
Q  105 aatcctaattcatgtattcctctttccaaacattcacaccgcgtttttgaaa 156  Q
    || |||||||||  |||||||| |||||||||  ||||||| ||||||||||    
T  8466 aaacctaattcacttattcctccttccaaacacacacaccgtgtttttgaaa 8517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 12 - 156
Target Start/End: Original strand, 3111209 - 3111356
Alignment:
Q  12 cccagaatgactaatataccttttaactaaaataaaaattttaaattaat---aaatcatttcattcatcgcttaatcactgaaacctggaaacgtaatc 108  Q
    ||||||||||||||||||  ||||||  ||||||||||||||||||||||   ||||  |||||| ||| |||||||||||||||| ||||||||||| |    
T  3111209 cccagaatgactaatatattttttaataaaaataaaaattttaaattaatctaaaattctttcatccattgcttaatcactgaaacttggaaacgtaaac 3111308  T
Q  109 ctaattcatgtattcctctttccaaacattcacaccgcgtttttgaaa 156  Q
    |||||||| ||||||||| || |||||| |||||||| ||||||||||    
T  3111309 ctaattcacgtattcctccttgcaaacactcacaccgtgtttttgaaa 3111356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 15 - 130
Target Start/End: Original strand, 35598477 - 35598594
Alignment:
Q  15 agaatgactaatataccttttaactaaaataaaaattttaaattaat---aaatcatttcattcatcgcttaatcactgaaacctggaaacgtaatccta 111  Q
    ||||||||||||||||| |||||||||| || |||||||||||||||   ||||| |||||| |||| ||||||||||||||||| ||||||||| ||||    
T  35598477 agaatgactaatataccctttaactaaa-tacaaattttaaattaatctaaaatcctttcatccatcacttaatcactgaaacctagaaacgtaaaccta 35598575  T
Q  112 attcatgtattcctctttc 130  Q
    ||||||||||  |||||||    
T  35598576 attcatgtatcgctctttc 35598594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 38742513 - 38742565
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  38742513 acaccccagaatgactaatataccctttaactaaaataaaaatttcaaattaa 38742565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 41118025 - 41118077
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  41118025 acaccccagaatgactaatataccctttaactaaaataaaaatttcaaattaa 41118077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 5543608 - 5543657
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaat 57  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  5543608 acaccccagaatgactaatataccctttaactaaaataaaaatttcaaat 5543657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 31622709 - 31622660
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaat 57  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  31622709 acaccccagaatgactaatataccctttaactaaaataaaaatttcaaat 31622660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 25105940 - 25105888
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||||||| ||||||||||||||| |||||||||||||||||||| |||||||    
T  25105940 acaccccaaaatgactaatataccctttaactaaaataaaaatttcaaattaa 25105888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 44509549 - 44509497
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    ||||| |||||||||||||||||| |||||||||||||||||||| |||||||    
T  44509549 acacctcagaatgactaatataccctttaactaaaataaaaatttcaaattaa 44509497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 47019894 - 47019946
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||||||||||||||||||||| | |||||||||||||||||||| |||||||    
T  47019894 acaccccagaatgactaatatatcctttaactaaaataaaaatttcaaattaa 47019946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 47455806 - 47455754
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    ||||| |||||||||||||||||| |||||||||||||||||||| |||||||    
T  47455806 acacctcagaatgactaatataccctttaactaaaataaaaatttcaaattaa 47455754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 44291880 - 44291831
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaat 57  Q
    |||| ||||||| |||||||||||||||||||||||||||||||| ||||    
T  44291880 acactccagaataactaatataccttttaactaaaataaaaatttcaaat 44291831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 31587151 - 31587203
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||||||||||||||||||||||| ||||| ||||||||||| || |||||||    
T  31587151 acaccccagaatgactaatataccctttaattaaaataaaaaattcaaattaa 31587203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 12849111 - 12849062
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaat 57  Q
    |||||| ||||||||||||||||| ||||| |||||||||||||| ||||    
T  12849111 acaccctagaatgactaatataccctttaattaaaataaaaatttcaaat 12849062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 40186010 - 40186059
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaat 57  Q
    |||| ||||||| ||||||||||| |||||||||||||||||||| ||||    
T  40186010 acactccagaataactaatataccctttaactaaaataaaaatttcaaat 40186059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 9740584 - 9740628
Alignment:
Q  16 gaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||||||||||||||| ||||| |||||||||||||| |||||||    
T  9740584 gaatgactaatataccctttaattaaaataaaaatttcaaattaa 9740628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 18675918 - 18675955
Alignment:
Q  23 taatataccttttaactaaaataaaaattttaaattaa 60  Q
    ||||||| | ||||||||||||||||||||||||||||    
T  18675918 taatatatcctttaactaaaataaaaattttaaattaa 18675955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 27902816 - 27902766
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||| |||||||||||||||  || |||||||||||||||||||| |||||||    
T  27902816 acactccagaatgactaata--ccctttaactaaaataaaaatttcaaattaa 27902766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 6e-33; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 14 - 156
Target Start/End: Original strand, 1103894 - 1104039
Alignment:
Q  14 cagaatgactaatataccttttaactaaaataaaaattttaaattaat---aaatcatttcattcatcgcttaatcactgaaacctggaaacgtaatcct 110  Q
    |||||||||||||||||| ||||||| |||||||||||| ||||||||   ||||  |||||| ||||||||| | |||||||| ||||||||||| |||    
T  1103894 cagaatgactaatataccctttaactgaaataaaaatttcaaattaatctaaaattctttcatccatcgcttattaactgaaacttggaaacgtaaacct 1103993  T
Q  111 aattcatgtattcctctttccaaacattcacaccgcgtttttgaaa 156  Q
    |||||| ||||||||  ||||||||| |||||||| ||||||||||    
T  1103994 aattcacgtattccttcttccaaacactcacaccgtgtttttgaaa 1104039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 27 - 136
Target Start/End: Complemental strand, 5459293 - 5459184
Alignment:
Q  27 ataccttttaactaaaataaaaattttaaattaat---aaatcatttcattcatcgcttaatcactgaaacctggaaacgtaatcctaattcatgtattc 123  Q
    ||||| |||||||||||||||||||| ||||||||   ||||| |||||| ||||||||||||||||||||||   ||||||| |||||||||  |||||    
T  5459293 ataccctttaactaaaataaaaatttcaaattaatctaaaatcctttcatccatcgcttaatcactgaaacct---aacgtaaacctaattcacatattc 5459197  T
Q  124 ctctttccaaaca 136  Q
    ||| |||||||||    
T  5459196 ctccttccaaaca 5459184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 482454 - 482503
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaat 57  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  482454 acaccctagaatgactaatataccctttaactaaaataaaaattttaaat 482503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 35392866 - 35392915
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaat 57  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  35392866 acaccccagaatgactaatataccctttaactaaaataaaaatttcaaat 35392915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 29998433 - 29998381
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    ||||| |||||||||||||||||| |||||||||||||||||||| |||||||    
T  29998433 acacctcagaatgactaatataccctttaactaaaataaaaatttcaaattaa 29998381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 30656632 - 30656580
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    ||||| || ||||||||||||| ||||||||||||||||||||||||||||||    
T  30656632 acacctcaaaatgactaatatatcttttaactaaaataaaaattttaaattaa 30656580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 32834935 - 32834887
Alignment:
Q  12 cccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||    
T  32834935 cccagaatgactaatataccctttaactaaaataaaaatttcaaattaa 32834887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 20188299 - 20188250
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaat 57  Q
    |||| ||||||| |||||||||||||||||||||||||||||||| ||||    
T  20188299 acactccagaataactaatataccttttaactaaaataaaaatttcaaat 20188250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 20207368 - 20207319
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaat 57  Q
    |||| ||||||| |||||||||||||||||||||||||||||||| ||||    
T  20207368 acactccagaataactaatataccttttaactaaaataaaaatttcaaat 20207319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 30699356 - 30699405
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaat 57  Q
    ||||| |||||||||||||||||| |||||||||||||||||||| ||||    
T  30699356 acacctcagaatgactaatataccctttaactaaaataaaaatttcaaat 30699405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 36782313 - 36782268
Alignment:
Q  15 agaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||    
T  36782313 agaatgactaatataccctttaactaaaataaaaatttcaaattaa 36782268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 12987523 - 12987471
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    ||||| ||||||||||||||| || |||||||||||||||||||| |||||||    
T  12987523 acacctcagaatgactaatatgccctttaactaaaataaaaatttcaaattaa 12987471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 24757293 - 24757345
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||||| |||||||||| |||||| |||||||||||||||||||| |||||||    
T  24757293 acaccctagaatgactattataccctttaactaaaataaaaatttcaaattaa 24757345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 31098027 - 31097975
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||| ||||||||||||||||| | |||||||||||||||||||| |||||||    
T  31098027 acactccagaatgactaatatatcctttaactaaaataaaaatttcaaattaa 31097975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 33569340 - 33569468
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaat---aaatcatttcattcatcgcttaatcactgaaacctggaaacgt 104  Q
    |||||||| | ||||||||||||| |||||||||||||||||||| ||||||||   ||||| |||||| |||||||||||||||||||| |   || ||    
T  33569340 acaccccaaactgactaatataccctttaactaaaataaaaatttcaaattaatctaaaatcctttcatccatcgcttaatcactgaaactt---aatgt 33569436  T
Q  105 aatcctaattcatgtattcctctttccaaaca 136  Q
    || |||||||||  |||||||| |||||||||    
T  33569437 aaacctaattcacatattcctccttccaaaca 33569468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 11255379 - 11255331
Alignment:
Q  13 ccagaatgactaatataccttttaactaaaataaaaattttaaattaat 61  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11255379 ccagaatgactaatataccttttaactaaaataaaaatttcaaattaat 11255331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 6231035 - 6230986
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaat 57  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  6231035 acaccccagaatgactaatataccctttaactaaaataaaaatttcaaat 6230986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 8336180 - 8336132
Alignment:
Q  12 cccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  8336180 cccataatgactaatataccctttaactaaaataaaaattttaaattaa 8336132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 29296970 - 29296918
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||||||||||||| ||||||||| |||||||||||||||||||| |||||||    
T  29296970 acaccccagaatgattaatataccctttaactaaaataaaaatttcaaattaa 29296918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 10691357 - 10691403
Alignment:
Q  14 cagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||    
T  10691357 cagaatgactaatataccctttaactaaaataaaaatttcaaattaa 10691403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 31377569 - 31377615
Alignment:
Q  14 cagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||    
T  31377569 cagaatgactaatataccctttaactaaaataaaaatttcaaattaa 31377615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 8835874 - 8835919
Alignment:
Q  15 agaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||    
T  8835874 agaatgactaatataccctttaactaaaataaaaatttcaaattaa 8835919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 25032095 - 25032046
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaat 57  Q
    ||||| |||||||||||||||||| |||||||||||||||||||| ||||    
T  25032095 acacctcagaatgactaatataccctttaactaaaataaaaatttcaaat 25032046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 18618189 - 18618137
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||||| |||||||||||||||||  ||||||||||||||||||| |||||||    
T  18618189 acaccctagaatgactaatataccccttaactaaaataaaaatttcaaattaa 18618137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 33591307 - 33591359
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||| ||||||||||||||| ||| |||||||||||||||||||| |||||||    
T  33591307 acactccagaatgactaatacaccctttaactaaaataaaaatttcaaattaa 33591359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 42674861 - 42674913
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    ||||| |||||||||||| ||||| ||||| ||||||||||||||||||||||    
T  42674861 acacctcagaatgactaacataccctttaattaaaataaaaattttaaattaa 42674913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 8781528 - 8781581
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaat 61  Q
    |||||| ||| | ||||||||||| |||||||||||||||||||| ||||||||    
T  8781528 acaccctagattaactaatataccctttaactaaaataaaaatttcaaattaat 8781581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 41742822 - 41742864
Alignment:
Q  15 agaatgactaatataccttttaactaaaataaaaattttaaat 57  Q
    ||||||||||||||||| ||||| |||||||||||||| ||||    
T  41742822 agaatgactaatataccctttaattaaaataaaaatttcaaat 41742864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 15471999 - 15472044
Alignment:
Q  15 agaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    ||||||| ||||||| | |||||||||||||||||||| |||||||    
T  15471999 agaatgattaatatatcctttaactaaaataaaaatttcaaattaa 15472044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 104911 - 104963
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  104911 acaccccagaatgactaatataccctttaactaaaataaaaatttcaaattaa 104963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 18676064 - 18676116
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  18676064 acaccccagaatgactaatataccctttaactaaaataaaaatttcaaattaa 18676116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 742228 - 742280
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||||| ||||||||||||||||| |||||||||||||||||||| |||||||    
T  742228 acaccctagaatgactaatataccatttaactaaaataaaaatttcaaattaa 742280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 10791167 - 10791116
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  10791167 acaccccagaatgactaatataccctt-aactaaaataaaaattttaaattaa 10791116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 33490427 - 33490375
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||| ||||||||||||||||||| |||||||||||||||||||| |||||||    
T  33490427 acactccagaatgactaatataccctttaactaaaataaaaatttcaaattaa 33490375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 8063613 - 8063568
Alignment:
Q  12 cccagaatgactaatataccttttaactaaaataaaaattttaaat 57  Q
    |||||||||| ||||||||| |||||||||||||||||||| ||||    
T  8063613 cccagaatgattaatataccctttaactaaaataaaaatttcaaat 8063568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 34476401 - 34476349
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaattaa 60  Q
    |||||||| ||||||||| ||||| ||||| ||||||||||||||| ||||||    
T  34476401 acaccccataatgactaaaataccctttaattaaaataaaaattttgaattaa 34476349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 28913540 - 28913583
Alignment:
Q  14 cagaatgactaatataccttttaactaaaataaaaattttaaat 57  Q
    |||||||||||||||| | |||||||||||||||||||| ||||    
T  28913540 cagaatgactaatatatcctttaactaaaataaaaatttcaaat 28913583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1360 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold1360
Description:

Target: scaffold1360; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 381 - 429
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaa 56  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  381 acactccagaatgactaatataccctttaactaaaataaaaattttaaa 429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1360; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 180
Target Start/End: Original strand, 440 - 519
Alignment:
Q  102 cgtaatcctaattcatgtattcctctttccaaacattcacaccgcgt-ttttgaaagctatcgctctttctcatcaaact 180  Q
    ||||||| ||||||| ||||||||||||||||||| ||||||| | |  ||| | ||||||| |||||||||||||||||    
T  440 cgtaatcataattcacgtattcctctttccaaacactcacaccacttcgttttagagctatcactctttctcatcaaact 519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 42052 - 42101
Alignment:
Q  8 acaccccagaatgactaatataccttttaactaaaataaaaattttaaat 57  Q
    |||||| ||||||||||||||||| |||||||||||||||||||| ||||    
T  42052 acacccaagaatgactaatataccctttaactaaaataaaaatttcaaat 42101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0562 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0562
Description:

Target: scaffold0562; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 5746 - 5792
Alignment:
Q  11 ccccagaatgactaatataccttttaactaaaataaaaattttaaat 57  Q
    ||||||||||||||||||| | |||||||||||||||||||| ||||    
T  5746 ccccagaatgactaatatatcctttaactaaaataaaaatttcaaat 5792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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