View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5188-Insertion-6 (Length: 581)
Name: NF5188-Insertion-6
Description: NF5188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5188-Insertion-6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 8 - 581
Target Start/End: Complemental strand, 6273520 - 6272950
Alignment:
| Q |
8 |
tattcaataccctttagttttagagcaatttgcacccttcgaacaaatggacttcctcctacacccaataattgaacttctccttgatctttggccattt |
107 |
Q |
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| T |
6273520 |
tattcaataccctttagttttagagcaatttgcacccttcgaacaaatgggcttcctcctacacctaacaattgaacttctccttgatctttggccattt |
6273421 |
T |
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| Q |
108 |
caaagtttagatattctaagctcttcacaaaatgtggatgatgtgaatttcagtttagaagttgtgactctataaaagtggggactttggtatatattgt |
207 |
Q |
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| T |
6273420 |
caacgtttagatattctaagctcttcacaaaatgtcgatg---tgaattttagtttagaagttgtgactctataaaactggggactttggtatatattgt |
6273324 |
T |
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| Q |
208 |
cataaattagttaggtaaggtttgtgatgtagaattcaccacgtattcattcatgttattactatagtagttacgtaagaccttaactaccaaattgtca |
307 |
Q |
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| T |
6273323 |
cataaattagttaggtaaggtttgtgatgtagaattcaccacgtattcattcatgttattactatagtagttacgtaagaccttaactaccaaattgtca |
6273224 |
T |
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| Q |
308 |
acgagaaatagcattttaaggcacgaatttaacatgaaaattcgactataaattatgttatatagttaatataatttagatatgtgattaatcatgttta |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6273223 |
acgagaaatagcattttaaggcacgaatttaacatgaaaagtcgactataaattatgttatatagttaatataatttagatatgtgattaatcatgttta |
6273124 |
T |
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| Q |
408 |
ttaaatgattaatgagtatgataaggtgtaccaaatcagttattaatcacatataaagattaaacgtaatataagcaaattaaaaatttagaacnnnnnn |
507 |
Q |
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| T |
6273123 |
ttaaatgattaatgagtatgataaggtgtaccaaatcagttattaatcacatataaagattaaacgtaatataagcaaattaaaaatttagaactttttt |
6273024 |
T |
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| Q |
508 |
nnatatatgttttaataacttagaacttctaattcaataattaaatatataaaatttagaatcatgtagtatgt |
581 |
Q |
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| T |
6273023 |
ttatatatgttttaataacttagaacttctaattcaataattaaatatataaaatttagaatcatgtagtatgt |
6272950 |
T |
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