View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5188_high_10 (Length: 236)
Name: NF5188_high_10
Description: NF5188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5188_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 49951432 - 49951654
Alignment:
| Q |
1 |
atatagaaggtaacacatgcacttatatttaaa-gggatatgctaacaaacattcttggagcacttatacgagtaggggaaaaaataaactttgtattaa |
99 |
Q |
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| T |
49951432 |
atatagaaggtaacacatgcacttatacttaaaagggagatgctaacaaacattcttggagcacttatacgagtaggggaaaaaataaactttgtattaa |
49951531 |
T |
|
| Q |
100 |
annnnnnnnnnnnnnnagacttttagatcgctaactacccacttatatttattgtatatgattcattaacaaaagtgacccaagaaaaattgttagcatt |
199 |
Q |
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| T |
49951532 |
attttttgcgttttttagacttttagatcgctaactacccacttatatttattgtatatgattcattaacaaaagtgacccaagaaaaattgttagcatt |
49951631 |
T |
|
| Q |
200 |
ctccatgtttaaaatgcaaaagg |
222 |
Q |
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||||||||||||||||||||||| |
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| T |
49951632 |
ctccatgtttaaaatgcaaaagg |
49951654 |
T |
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