View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5188_high_2 (Length: 414)
Name: NF5188_high_2
Description: NF5188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5188_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 47043466 - 47043060
Alignment:
| Q |
1 |
tcatagggatcgccatggtaaaatttgtctaatgtgatgcttaacggttctcttttatgggaaacacatcttcagggagccaaaaggagacgtatgttaa |
100 |
Q |
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| T |
47043466 |
tcatagggatggccatggtaaaatttgtctaatgtgatgcttaacggttctcttttatgggaaacacatcttcagggagccaaaaggagacgtatgttaa |
47043367 |
T |
|
| Q |
101 |
ttgtaatgtgaccatggagagtcgtggcggtggagctaaccaggtgcatgcagacaaataaatagaaaatacagtggcatgcctttaatgatatgaaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47043366 |
ttgtaatgtgaccatggagagtcgtggcggtggagctaaccaggtgcatgcagacaaataaatagaaaatacagtggcatgcctttaatgatatgaaact |
47043267 |
T |
|
| Q |
201 |
tgtgaaatcaaaattttggcatcgaaggtaactatttactatcatattaatttaaatgaaatcaaaatttgaagtatt--ctcttattctaaaattgctc |
298 |
Q |
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|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
47043266 |
tgtgaaatcaaaatgttggcatcgaaggtcactatttactatcatattaatttaaatgaaatcaaaatttgaagtattctctcttattctaaaattgctc |
47043167 |
T |
|
| Q |
299 |
aatattatggtctcactttggttttgtttaaaacagaaagcataataaagcaaatgcctttnnnnnnntaatgaaaaatcatttgtctaattaattcaat |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
47043166 |
aatattatggtctcactttggttttgtttaaaacagaaagcataataaagcaaatgcctttaaaaaaataatgaaaaatcatttgtctaattaatccaat |
47043067 |
T |
|
| Q |
399 |
gatgatg |
405 |
Q |
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| T |
47043066 |
gatgatg |
47043060 |
T |
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