View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5188_high_5 (Length: 256)
Name: NF5188_high_5
Description: NF5188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5188_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 6273554 - 6273797
Alignment:
| Q |
1 |
tgatcttcttcttaagtataatcctattcacaagaaagtgcctgtttttgtccataatggaaaacccttagctgagtcccttgtgatccttgaatacatt |
100 |
Q |
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| T |
6273554 |
tgatcttcttcttaagtataatcctattcacaagaaggtgcctgtttttgtccataatggaaaacccttagctgagtcccttgtgatccttgaatacatt |
6273653 |
T |
|
| Q |
101 |
gatgaaacatgggagaactatcctattttccctcaacaaccttatgagaaagccttggctcgattttggtcgaggttcattgatgacaaggtgagtcata |
200 |
Q |
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| T |
6273654 |
gatgaaacatgggagaactatcctattttccctcaacaaccctatgagaaagccttggctcgattttggtctagattcattgatgacaaggtgagtccta |
6273753 |
T |
|
| Q |
201 |
tttattttctattttcattataaaactatacttaatgcatgatg |
244 |
Q |
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| T |
6273754 |
tttattttctattttaattataaaattatactaaatgcatgatg |
6273797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 171
Target Start/End: Original strand, 6269634 - 6269798
Alignment:
| Q |
7 |
tcttcttaagtataatcctattcacaagaaagtgcctgtttttgtccataatggaaaacccttagctgagtcccttgtgatccttgaatacattgatgaa |
106 |
Q |
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| T |
6269634 |
tcttcttaaatacaatcctgtttacaagaaggtgcctattcttgttcacaatggaaatccaattgctgagtctcttatcattcttgaatacatagatgag |
6269733 |
T |
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| Q |
107 |
acatgggagaactatcctattttccctcaacaaccttatgagaaagccttggctcgattttggtc |
171 |
Q |
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| T |
6269734 |
acatggaagaataatccacttttgtctgaggatccttatgagagagccttggctcgtttttggtc |
6269798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 23802652 - 23802579
Alignment:
| Q |
32 |
aagaaagtgcctgtttttgtccataatggaaaacccttagctgagtcccttgtgatccttgaatacattgatga |
105 |
Q |
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|||||||| ||||||||| | ||||||| || ||| || | |||||||||||||| |||||||| |||||||| |
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| T |
23802652 |
aagaaagttcctgtttttattcataatgataagcccatatcagagtcccttgtgattcttgaatatattgatga |
23802579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 23840629 - 23840588
Alignment:
| Q |
151 |
agccttggctcgattttggtcgaggttcattgatgacaaggt |
192 |
Q |
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| T |
23840629 |
agccttggctcgattttggtcgaaattcatcgatgacaaggt |
23840588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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