View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5188_high_9 (Length: 237)
Name: NF5188_high_9
Description: NF5188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5188_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 31802224 - 31802011
Alignment:
| Q |
18 |
cacaaggtttagtaaggactcatagtagtacccacaaaagatctactaatcaaggatcaagaggatttaaaccgctannnnnnnnnnatatagactataa |
117 |
Q |
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| T |
31802224 |
cacaaggtttagtaaggactcatagtagtgcccacaaaagatctactaattaaggatcaagaggatttaaaccgatatttttatt---tatagactataa |
31802128 |
T |
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| Q |
118 |
tatctaaatctaccagttgagacaaacttcattggaagcaatctaagttctaacaaatacattagccattgacaaccacaccggaataaattatcatagc |
217 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
31802127 |
tatctaaatataccagttgagacaaacttcattggaagcaatctaagttctaacaaatacattacccattgacaaccacaccggaataaattatcatagg |
31802028 |
T |
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| Q |
218 |
aagtaaaagggttactt |
234 |
Q |
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||||||||||||||||| |
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| T |
31802027 |
aagtaaaagggttactt |
31802011 |
T |
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