View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5188_low_1 (Length: 575)
Name: NF5188_low_1
Description: NF5188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5188_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 480; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 46 - 566
Target Start/End: Complemental strand, 41606864 - 41606342
Alignment:
| Q |
46 |
gtgagcagtaaagaagatgagtgacctatatgggttaccggaggatctccggcggttgataacatcatcaagaaacactacacatctaccagcagaacca |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41606864 |
gtgagcagtaaagaagatgagtgacctatatgggttaccggaggatctccggcggttgataacatcatcaagaaacactacacatctaccagcagaacca |
41606765 |
T |
|
| Q |
146 |
ccatgtttgtatggtggtgctgctacttttcctccaccaaattattcctatgaccctatgatggttggtgattttttctaacatcgtagtaacttcactc |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||| |
|
|
| T |
41606764 |
ccatgtttgtatggtggtgctgctacttttcctccaccaaattattcctatgaccctatgatggttggtgatgttttctaccctcgtagtaacttcactc |
41606665 |
T |
|
| Q |
246 |
gccaccattatgattattcctccactgttaaccctacaactaccactatagctgctgcttctaattcagatcatgctactgcttctactgcattctgtgt |
345 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41606664 |
accaccactatgactattcctccactgttaaccctacaactaccactatagctgctgcttcaaattcagatcatgctactgcttctactgcattctgtgt |
41606565 |
T |
|
| Q |
346 |
aggtttagaaacttctgataaaggatggcttggtaactttgattcttgtaacaacagatggcctagacaagagactctttctcttctagaaatcagatct |
445 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41606564 |
aggtttagaaacttctgataaaggatggcttggtaactttgattcttgtaacaacagatggcccagacaagagactctttctcttctagaaatcagatct |
41606465 |
T |
|
| Q |
446 |
cgtcttgattctaagttcagagagaataatcagaaagcacccttgtggaatgaaatttctaggtatatgttagtgtcttaa--ctcttaattaattactg |
543 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41606464 |
cgtcttgattctaagttcagagagaataatcagaaagcacccttgtggaatgaaatttctaggtatatgttagtgtcttaactctcttaattaattactg |
41606365 |
T |
|
| Q |
544 |
gtttaccaagctttttatttcac |
566 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
41606364 |
gtttaccaagctttttatttcac |
41606342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 453
Target Start/End: Original strand, 26598001 - 26598053
Alignment:
| Q |
401 |
agatggcctagacaagagactctttctcttctagaaatcagatctcgtcttga |
453 |
Q |
| |
|
|||||||| |||||||| |||||| ||||||| |||||||||||||||||||| |
|
|
| T |
26598001 |
agatggccaagacaagaaactcttactcttcttgaaatcagatctcgtcttga |
26598053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University