View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5188_low_11 (Length: 220)

Name: NF5188_low_11
Description: NF5188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5188_low_11
NF5188_low_11
[»] chr5 (2 HSPs)
chr5 (13-188)||(39292932-39293107)
chr5 (24-94)||(31079751-31079821)
[»] chr2 (8 HSPs)
chr2 (13-115)||(35567912-35568013)
chr2 (22-121)||(30957694-30957794)
chr2 (37-100)||(45397372-45397435)
chr2 (34-100)||(28402048-28402114)
chr2 (9-70)||(28401488-28401549)
chr2 (8-97)||(37784458-37784547)
chr2 (9-93)||(26179622-26179706)
chr2 (20-70)||(35566976-35567026)
[»] chr7 (3 HSPs)
chr7 (21-125)||(38178692-38178795)
chr7 (13-94)||(24555974-24556055)
chr7 (36-125)||(39436138-39436227)
[»] chr8 (2 HSPs)
chr8 (34-111)||(6074914-6074991)
chr8 (62-109)||(34404709-34404756)
[»] chr1 (3 HSPs)
chr1 (24-104)||(13832268-13832348)
chr1 (13-70)||(20290480-20290537)
chr1 (13-94)||(52282265-52282346)
[»] scaffold0667 (1 HSPs)
scaffold0667 (8-126)||(2673-2791)
[»] chr6 (1 HSPs)
chr6 (8-94)||(9880567-9880653)
[»] chr4 (2 HSPs)
chr4 (8-94)||(54628419-54628505)
chr4 (13-70)||(5188273-5188330)
[»] scaffold0002 (1 HSPs)
scaffold0002 (9-96)||(149859-149946)
[»] chr3 (2 HSPs)
chr3 (9-96)||(13157042-13157129)
chr3 (20-95)||(51489852-51489927)


Alignment Details
Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 188
Target Start/End: Complemental strand, 39293107 - 39292932
Alignment:
Q  13 aaattatactcacctcccctaaggtttctttaaacaacacatacaccctctctagtttaaaaatgaacactaacctcccttatttgtttctttaattaac 112  Q
    |||||| | |||||||||| || ||||||||||||| |   || || |  ||||||||||||||||||||| || ||||||||||||||| |||||||||    
T  39293107 aaattacagtcacctccccgaaagtttctttaaacagcgtgtatacaccttctagtttaaaaatgaacacttacatcccttatttgtttcattaattaac 39293008  T
Q  113 atacacctccctttgcatgatagctctg-taacagtctgttaacttctttgatgccgtggaagtttgtttgtctatc 188  Q
    ||| ||||||| ||| ||| || ||||| ||| ||||||||||||| |||||||| ||| ||| |||||||||||||    
T  39293007 atatacctccc-ttgtatgttaactctgttaatagtctgttaacttatttgatgcagtgaaaggttgtttgtctatc 39292932  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 31079821 - 31079751
Alignment:
Q  24 acctcccctaaggtttctttaaacaacacatacaccctctctagtttaaaaatgaacactaacctccctta 94  Q
    |||||||||||||||| || |||   |||  ||||| |||||||||| |||||||||| ||||||||||||    
T  31079821 acctcccctaaggtttattaaaatggcactaacaccttctctagttttaaaatgaacattaacctccctta 31079751  T

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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 35568013 - 35567912
Alignment:
Q  13 aaattatactcacctcccctaaggtttctttaaacaacacatacaccctctctagtttaaaaatgaacactaacctcccttatttgtttctttaattaac 112  Q
    |||||| ||||||| |||||  ||||||||||||||||||||| |||| ||||||||||||||| |||| | ||||||||||||||||||||||||||||    
T  35568013 aaattacactcaccacccctcgggtttctttaaacaacacatagaccc-ctctagtttaaaaattaacattgacctcccttatttgtttctttaattaac 35567915  T
Q  113 ata 115  Q
    |||    
T  35567914 ata 35567912  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 30957694 - 30957794
Alignment:
Q  22 tcacctcccctaaggtttctttaaacaacacatacaccctc-tctagtttaaaaatgaacactaacctcccttatttgtttctttaattaacatacacct 120  Q
    ||||||||| | |||||||||||||||||| ||| ||| || |||||||||||| |||||| | |||||||||||||||||   ||||||||||| ||||    
T  30957694 tcacctcccttgaggtttctttaaacaacatatagaccttcctctagtttaaaattgaacatttacctcccttatttgttttcctaattaacatatacct 30957793  T
Q  121 c 121  Q
    |    
T  30957794 c 30957794  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 100
Target Start/End: Original strand, 45397372 - 45397435
Alignment:
Q  37 tttctttaaacaacacatacaccctctctagtttaaaaatgaacactaacctcccttatttgtt 100  Q
    |||||||||| |||||| | |||| |||||||||| ||||||||| | ||||||||||||||||    
T  45397372 tttctttaaataacacacaaaccccctctagtttagaaatgaacattgacctcccttatttgtt 45397435  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 28402114 - 28402048
Alignment:
Q  34 aggtttctttaaacaacacatacaccctctctagtttaaaaatgaacactaacctcccttatttgtt 100  Q
    ||||||||||||| |||||| | |||| |||||||||| ||||||| | | ||||||||||||||||    
T  28402114 aggtttctttaaataacacacaaaccccctctagtttagaaatgaatattgacctcccttatttgtt 28402048  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 28401488 - 28401549
Alignment:
Q  9 gggtaaattatactcacctcccctaaggtttctttaaacaacacatacaccctctctagttt 70  Q
    |||||||||| |||||||| || | |||||||||||||||||||| | |||| |||||||||    
T  28401488 gggtaaattacactcaccttccttgaggtttctttaaacaacacagagaccccctctagttt 28401549  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 37784547 - 37784458
Alignment:
Q  8 tgggtaaattatactcacctcccctaaggtttctttaaacaacacatacaccctctctagtttaaaaatgaacactaacctcccttattt 97  Q
    ||||||||||||||| |||||||||||||||   ||||| |||| | |||||| ||||| ||| |||    |||||||||||||||||||    
T  37784547 tgggtaaattatactaacctcccctaaggttgacttaaataacataaacacccactctaatttcaaaccagacactaacctcccttattt 37784458  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 26179706 - 26179622
Alignment:
Q  9 gggtaaattatactcacctcccctaaggtttctttaaacaacacatacaccctctctagtttaaaaatgaacactaacctccctt 93  Q
    |||||| ||| ||||||||||| | ||||||  ||||| |||||| |||||| ||||||||| ||| | ||||| ||||||||||    
T  26179706 gggtaacttacactcacctcccttgaggttttcttaaataacacaaacaccccctctagttttaaactaaacacaaacctccctt 26179622  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 35566976 - 35567026
Alignment:
Q  20 actcacctcccctaaggtttctttaaacaacacatacaccctctctagttt 70  Q
    |||||||||||||||||||||| |||| |||||||| || | |||||||||    
T  35566976 actcacctcccctaaggtttctctaaaaaacacatatacaccctctagttt 35567026  T

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Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 38178795 - 38178692
Alignment:
Q  21 ctcacctcccctaaggtttctttaaacaacacatacaccctctctagtttaaaaatgaacactaacctcccttatttgtttctttaattaacatacacct 120  Q
    |||||||||||||||||||  |||||||||||||  |||| |||||||||||||||||||||||||||||||||||| ||| | ||||| ||| ||||||    
T  38178795 ctcacctcccctaaggttttcttaaacaacacatggaccc-ctctagtttaaaaatgaacactaacctcccttatttatttatataattgacacacacct 38178697  T
Q  121 ccctt 125  Q
    |||||    
T  38178696 ccctt 38178692  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 24556055 - 24555974
Alignment:
Q  13 aaattatactcacctcccctaaggtttctttaaacaacacatacaccctctctagtttaaaaatgaacactaacctccctta 94  Q
    |||||| ||| ||||||||| |||||| || |||| ||||| |||||| ||||||||||| |||  ||| ||||||||||||    
T  24556055 aaattacactaacctcccctgaggtttgttcaaacgacacaaacaccccctctagtttaataatagacattaacctccctta 24555974  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 125
Target Start/End: Complemental strand, 39436227 - 39436138
Alignment:
Q  36 gtttctttaaacaacacatacaccctctctagtttaaaaatgaacactaacctcccttatttgtttctttaattaacatacacctccctt 125  Q
    ||||||||| | |||| | | |||| ||||| |||| || |||||| | ||||||||||||||||||| ||||||||| | |||||||||    
T  39436227 gtttctttatataacataaaaaccccctctaatttagaattgaacattgacctcccttatttgtttctctaattaacacatacctccctt 39436138  T

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Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 6074914 - 6074991
Alignment:
Q  34 aggtttctttaaacaacacatacaccctctctagtttaaaaatgaacactaacctcccttatttgtttctttaattaa 111  Q
    |||||||||||||||||||| | |||| || ||||||||||||||||| | |||||||||||||||||||||||||||    
T  6074914 aggtttctttaaacaacacaaagaccccctttagtttaaaaatgaacattgacctcccttatttgtttctttaattaa 6074991  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 34404709 - 34404756
Alignment:
Q  62 ctctagtttaaaaatgaacactaacctcccttatttgtttctttaatt 109  Q
    ||||||||||||||||||||  |||||||||||||||||||| |||||    
T  34404709 ctctagtttaaaaatgaacatcaacctcccttatttgtttctctaatt 34404756  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 13832348 - 13832268
Alignment:
Q  24 acctcccctaaggtttctttaaacaacacatacaccctctctagtttaaaaatgaacactaacctcccttatttgtttctt 104  Q
    ||||||| ||| |||| |||||| ||| |||| | || |||||||||||||||||||| | ||||||||||||| ||||||    
T  13832348 acctcccttaaagtttttttaaataacgcatagatcccctctagtttaaaaatgaacattgacctcccttatttatttctt 13832268  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 20290480 - 20290537
Alignment:
Q  13 aaattatactcacctcccctaaggtttctttaaacaacacatacaccctctctagttt 70  Q
    |||||| ||| ||||||||| ||||||| ||||| |||||| ||||||||||||||||    
T  20290480 aaattacactgacctcccctgaggtttccttaaataacacaaacaccctctctagttt 20290537  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 52282265 - 52282346
Alignment:
Q  13 aaattatactcacctcccctaaggtttctttaaacaacacatacaccctctctagtttaaaaatgaacactaacctccctta 94  Q
    |||||| ||| ||||||||| |||||| || |||||||||| ||| |||||||||||| | |||  ||| ||||||||||||    
T  52282265 aaattacactaacctcccctgaggtttgttcaaacaacacaaacatcctctctagttttataatagacattaacctccctta 52282346  T

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Target: scaffold0667 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 2673 - 2791
Alignment:
Q  8 tgggtaaattatactcacctcccctaaggtttctttaaacaacacatacaccctctctagtttaaaaatgaacactaacctcccttatttgtttctttaa 107  Q
    |||| |||||| ||||||||| |   |||| || |||||  ||||| |||||  |||||||||||||||||||| | |||||||||| |  |||||||||    
T  2673 tgggaaaattacactcacctcgctcgaggtatccttaaatgacacaaacaccacctctagtttaaaaatgaacattgacctcccttactgatttctttaa 2772  T
Q  108 ttaacatacacctcccttt 126  Q
     | ||| ||||||||||||    
T  2773 ctgacacacacctcccttt 2791  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 9880567 - 9880653
Alignment:
Q  8 tgggtaaattatactcacctcccctaaggtttctttaaacaacacatacaccctctctagtttaaaaatgaacactaacctccctta 94  Q
    |||| |||||| ||||||||||| | || |||||||||| |||| | |||||| ||||||||| |||||  |||| |||||||||||    
T  9880567 tgggaaaattacactcacctcccttgagttttctttaaataacaaagacaccccctctagttttaaaatagacaccaacctccctta 9880653  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 54628419 - 54628505
Alignment:
Q  8 tgggtaaattatactcacctcccctaaggtttctttaaacaacacatacaccctctctagtttaaaaatgaacactaacctccctta 94  Q
    |||| |||||| | ||||||||| |||| ||||||||||  ||| | |||||| ||||||||| |||||  ||||||||||||||||    
T  54628419 tgggaaaattacagtcacctcccttaagttttctttaaattacaaagacaccccctctagttttaaaatcgacactaacctccctta 54628505  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 5188273 - 5188330
Alignment:
Q  13 aaattatactcacctcccctaaggtttctttaaacaacacatacaccctctctagttt 70  Q
    |||||| ||||||||| | | |||| ||||||||||||||||| |||| |||||||||    
T  5188273 aaattacactcacctctcttgaggtctctttaaacaacacatataccccctctagttt 5188330  T

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Target: scaffold0002 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 96
Target Start/End: Complemental strand, 149946 - 149859
Alignment:
Q  9 gggtaaattatactcacctcccctaaggtttctttaaacaacacatacaccctctctagtttaaaaatgaacactaacctcccttatt 96  Q
    |||||||||| |||||||| ||||||  ||| |||||| |||||| | |||  |||||||||| || |||||| | ||||||||||||    
T  149946 gggtaaattacactcaccttccctaaattttttttaaataacacacaaacctcctctagtttagaactgaacattcacctcccttatt 149859  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 96
Target Start/End: Original strand, 13157042 - 13157129
Alignment:
Q  9 gggtaaattatactcacctcccctaaggtttctttaaacaacacatacaccctctctagtttaaaaatgaacactaacctcccttatt 96  Q
    |||||||||| |||||||| ||||||  ||| |||||| |||||| | |||  |||||||||| || |||||| | ||||||||||||    
T  13157042 gggtaaattacactcaccttccctaaattttttttaaataacacacaaacctcctctagtttagaactgaacattcacctcccttatt 13157129  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 51489927 - 51489852
Alignment:
Q  20 actcacctcccctaaggtttctttaaacaacacatacaccctctctagtttaaaaatgaacactaacctcccttat 95  Q
    |||||||||||||||||||| || |||   |||  |||||| ||||||||| |||||||| | |||||||||||||    
T  51489927 actcacctcccctaaggtttattaaaatggcactaacaccccctctagttttaaaatgaatattaacctcccttat 51489852  T

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