View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5188_low_3 (Length: 268)

Name: NF5188_low_3
Description: NF5188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5188_low_3
NF5188_low_3
[»] chr3 (20 HSPs)
chr3 (115-251)||(15492554-15492690)
chr3 (134-252)||(12103876-12103994)
chr3 (130-252)||(6976014-6976136)
chr3 (143-261)||(39842248-39842369)
chr3 (123-205)||(50901076-50901158)
chr3 (199-261)||(50899392-50899454)
chr3 (175-251)||(12105111-12105187)
chr3 (193-252)||(5825886-5825945)
chr3 (155-261)||(44277507-44277603)
chr3 (192-252)||(38772394-38772454)
chr3 (180-216)||(55235478-55235514)
chr3 (198-252)||(23535782-23535837)
chr3 (163-224)||(27899623-27899683)
chr3 (143-179)||(23753180-23753216)
chr3 (143-179)||(32580514-32580550)
chr3 (143-179)||(36673943-36673979)
chr3 (143-179)||(37455220-37455256)
chr3 (143-179)||(40897504-40897540)
chr3 (143-179)||(44905646-44905682)
chr3 (143-179)||(45863196-45863232)
[»] chr4 (25 HSPs)
chr4 (115-259)||(20021744-20021889)
chr4 (137-261)||(12913645-12913768)
chr4 (137-252)||(8712191-8712306)
chr4 (134-261)||(44770624-44770753)
chr4 (115-242)||(36479084-36479211)
chr4 (123-216)||(56444542-56444635)
chr4 (134-234)||(36727677-36727777)
chr4 (131-261)||(28371229-28371363)
chr4 (149-224)||(11090632-11090707)
chr4 (144-231)||(9163509-9163594)
chr4 (134-224)||(40536731-40536819)
chr4 (132-252)||(49469630-49469749)
chr4 (143-177)||(28484270-28484304)
chr4 (174-223)||(39307038-39307087)
chr4 (143-179)||(5441777-5441813)
chr4 (143-179)||(5800339-5800375)
chr4 (143-179)||(27768439-27768475)
chr4 (143-179)||(30967133-30967169)
chr4 (143-179)||(32322441-32322477)
chr4 (143-179)||(32683817-32683853)
chr4 (143-179)||(37828220-37828256)
chr4 (143-179)||(41725488-41725524)
chr4 (143-179)||(49834624-49834660)
chr4 (143-179)||(54341517-54341553)
chr4 (143-179)||(54853266-54853302)
[»] chr8 (18 HSPs)
chr8 (115-261)||(39189590-39189738)
chr8 (134-241)||(29976904-29977011)
chr8 (143-234)||(4403403-4403496)
chr8 (163-239)||(14028112-14028188)
chr8 (131-251)||(13478038-13478156)
chr8 (167-252)||(29930463-29930548)
chr8 (176-216)||(4949742-4949782)
chr8 (134-252)||(8409987-8410104)
chr8 (143-181)||(43308296-43308334)
chr8 (143-179)||(9288284-9288320)
chr8 (143-179)||(14781922-14781958)
chr8 (143-179)||(18958517-18958553)
chr8 (143-179)||(19717664-19717700)
chr8 (143-179)||(32497916-32497952)
chr8 (143-179)||(39467308-39467344)
chr8 (198-241)||(41070372-41070416)
chr8 (143-179)||(42305394-42305430)
chr8 (143-179)||(44725581-44725617)
[»] chr1 (17 HSPs)
chr1 (130-252)||(9577254-9577375)
chr1 (134-251)||(47784638-47784757)
chr1 (161-223)||(31622446-31622507)
chr1 (134-212)||(37014451-37014529)
chr1 (143-179)||(45272941-45272977)
chr1 (134-226)||(955921-956011)
chr1 (143-179)||(5494886-5494922)
chr1 (143-179)||(6312950-6312986)
chr1 (143-179)||(9322296-9322332)
chr1 (143-179)||(15834822-15834858)
chr1 (143-179)||(25612466-25612502)
chr1 (143-179)||(25831037-25831073)
chr1 (143-179)||(28387205-28387241)
chr1 (143-179)||(29396222-29396258)
chr1 (143-179)||(38535934-38535970)
chr1 (143-179)||(38558152-38558188)
chr1 (143-179)||(51701969-51702005)
[»] chr5 (9 HSPs)
chr5 (149-261)||(8408544-8408654)
chr5 (161-221)||(9691221-9691280)
chr5 (161-225)||(24923303-24923367)
chr5 (143-179)||(4240257-4240293)
chr5 (143-179)||(5949487-5949523)
chr5 (143-179)||(13926306-13926342)
chr5 (143-179)||(13999885-13999921)
chr5 (143-179)||(37014229-37014265)
chr5 (143-179)||(39852745-39852781)
[»] chr7 (25 HSPs)
chr7 (117-252)||(10617180-10617315)
chr7 (123-238)||(10068765-10068881)
chr7 (123-251)||(3796862-3796990)
chr7 (137-224)||(43187093-43187180)
chr7 (115-242)||(19251828-19251955)
chr7 (130-187)||(12963979-12964036)
chr7 (174-241)||(43863644-43863711)
chr7 (145-251)||(45272745-45272848)
chr7 (198-242)||(19811027-19811071)
chr7 (171-231)||(44623028-44623088)
chr7 (143-179)||(8675704-8675740)
chr7 (197-258)||(12893861-12893923)
chr7 (134-231)||(1469999-1470094)
chr7 (143-179)||(510019-510055)
chr7 (143-179)||(23101664-23101700)
chr7 (143-179)||(28034644-28034680)
chr7 (143-179)||(28342684-28342720)
chr7 (143-179)||(29614591-29614627)
chr7 (143-179)||(32884144-32884180)
chr7 (143-179)||(33383047-33383083)
chr7 (143-179)||(37972673-37972709)
chr7 (143-179)||(39028460-39028496)
chr7 (143-179)||(40460510-40460546)
chr7 (143-179)||(41827701-41827737)
chr7 (143-179)||(44121729-44121765)
[»] chr2 (5 HSPs)
chr2 (130-242)||(10125123-10125235)
chr2 (175-242)||(13436220-13436287)
chr2 (143-179)||(379305-379341)
chr2 (143-179)||(7027278-7027314)
chr2 (143-179)||(13833210-13833246)
[»] chr6 (7 HSPs)
chr6 (165-223)||(11113391-11113448)
chr6 (143-224)||(7052215-7052294)
chr6 (143-179)||(4200242-4200278)
chr6 (143-179)||(7497472-7497508)
chr6 (143-179)||(14262227-14262263)
chr6 (143-179)||(31896011-31896047)
chr6 (143-179)||(34758870-34758906)
[»] scaffold0400 (1 HSPs)
scaffold0400 (134-252)||(14727-14844)
[»] scaffold0365 (1 HSPs)
scaffold0365 (134-252)||(15370-15487)
[»] scaffold0151 (2 HSPs)
scaffold0151 (134-252)||(24679-24796)
scaffold0151 (134-252)||(37196-37313)


Alignment Details
Target: chr3 (Bit Score: 121; Significance: 5e-62; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 115 - 251
Target Start/End: Complemental strand, 15492690 - 15492554
Alignment:
Q  115 ataaaaataaataacaaataagagtctttattgagaatattatgatagagagtgtgttgtaatcatttcttttcaacgagtctttaaaattcataaaatc 214  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  15492690 ataaaaataaataacaaataagagtctttattaagaatattatgatagagagtgtgttgtaatcatttcttttcaatgagtccttaaaattcataaaatc 15492591  T
Q  215 ttttgaaatcatataaatccataaaatcctttaaaat 251  Q
    |||||||||||||||||||||||||||| ||||||||    
T  15492590 ttttgaaatcatataaatccataaaatcttttaaaat 15492554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 134 - 252
Target Start/End: Original strand, 12103876 - 12103994
Alignment:
Q  134 aagagtctttattgagaatattatgatagagagtgtgttgtaatcatttcttttcaacgagtctttaaaattcataaaatcttttgaaatcatataaatc 233  Q
    |||||| | |||||| ||||||||||||||||| ||||||||||||||  ||||||| | |||||||||||| |||||||||||||||||| ||||||||    
T  12103876 aagagtttgtattgataatattatgatagagagagtgttgtaatcattcattttcaatgggtctttaaaattgataaaatcttttgaaatcttataaatc 12103975  T
Q  234 cataaaatcctttaaaatc 252  Q
    ||||||||| |||||||||    
T  12103976 cataaaatcttttaaaatc 12103994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 130 - 252
Target Start/End: Original strand, 6976014 - 6976136
Alignment:
Q  130 aaataagagtctttattgagaatattatgatagagagtgtgttgtaatcatttcttttcaacgagtctttaaaattcataaaatcttttgaaatcatata 229  Q
    |||||||||| | |||||||||||||||||||||| |||||||||||| ||||| ||||||  | || ||||||||||||||||||||||||||  ||||    
T  6976014 aaataagagtatatattgagaatattatgatagagggtgtgttgtaattatttcatttcaataaatccttaaaattcataaaatcttttgaaattttata 6976113  T
Q  230 aatccataaaatcctttaaaatc 252  Q
    ||| || |||||| ||| |||||    
T  6976114 aattcacaaaatcatttcaaatc 6976136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 143 - 261
Target Start/End: Complemental strand, 39842369 - 39842248
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatcatttcttttcaacgagt--ctttaaaattcataaaa-tcttttgaaatcatataaatccataaa 239  Q
    ||||||||||||||||||||||||| |||| ||||||| | ||||||| |||   | ||||||||||||||| |||||||||||| ||||||||||||||    
T  39842369 tattgagaatattatgatagagagtatgttctaatcatctattttcaatgagaaaccttaaaattcataaaaatcttttgaaatcttataaatccataaa 39842270  T
Q  240 atcctttaaaatctgatgatgt 261  Q
    |||| ||||||||| |||||||    
T  39842269 atccattaaaatcttatgatgt 39842248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 123 - 205
Target Start/End: Complemental strand, 50901158 - 50901076
Alignment:
Q  123 aaataacaaataagagtctttattgagaatattatgatagagagtgtgttgtaatcatttcttttcaacgagtctttaaaatt 205  Q
    |||||| |||||||||| | ||||||||||||||||||| | |||||||||||||||||||||||||| ||||| ||||||||    
T  50901158 aaataaaaaataagagtttgtattgagaatattatgatacaaagtgtgttgtaatcatttcttttcaatgagtccttaaaatt 50901076  T

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Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 199 - 261
Target Start/End: Complemental strand, 50899454 - 50899392
Alignment:
Q  199 taaaattcataaaatcttttgaaatcatataaatccataaaatcctttaaaatctgatgatgt 261  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  50899454 taaaatttataaaatcttttgaaatcttataaatccataaaatcctttaaaatcttatgatgt 50899392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 12105111 - 12105187
Alignment:
Q  175 aatcatttcttttcaacgagtctttaaaattcataaaatcttttgaaatcatataaatccataaaatcctttaaaat 251  Q
    |||||||  ||||||| |||| |||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  12105111 aatcattcattttcaatgagtttttaaaattcataaaatcttttgaaatcttatgaatccataaaatccttttaaat 12105187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 193 - 252
Target Start/End: Original strand, 5825886 - 5825945
Alignment:
Q  193 agtctttaaaattcataaaatcttttgaaatcatataaatccataaaatcctttaaaatc 252  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||| ||| |||||    
T  5825886 agtctttaaaattcataaaatcttttgaaatcttataaattcataaaatcgttttaaatc 5825945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 261
Target Start/End: Original strand, 44277507 - 44277603
Alignment:
Q  155 tatgatagagagtgtgttgtaatcatttcttttcaacgagtctttaaaattcataaaatcttttgaaatcatataaatccataaaatcctttaaaatctg 254  Q
    ||||||| ||| |||||||||||||||  ||||||| ||||||||||||||||||||||||          ||||||||||||||||| ||||||||||     
T  44277507 tatgataaagaatgtgttgtaatcattcattttcaatgagtctttaaaattcataaaatct----------tataaatccataaaatcttttaaaatctt 44277596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 38772394 - 38772454
Alignment:
Q  192 gagtctttaaaattcataaaatcttttgaaatcatataaatccataaaatcctttaaaatc 252  Q
    ||||| ||||||||||||||||||||||||||| ||||||| ||||||||| ||| |||||    
T  38772394 gagtccttaaaattcataaaatcttttgaaatcttataaattcataaaatcatttcaaatc 38772454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 55235478 - 55235514
Alignment:
Q  180 tttcttttcaacgagtctttaaaattcataaaatctt 216  Q
    ||||||||||||||||| |||||||||||||||||||    
T  55235478 tttcttttcaacgagtccttaaaattcataaaatctt 55235514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 252
Target Start/End: Complemental strand, 23535837 - 23535782
Alignment:
Q  198 ttaaaattcataaaatcttttgaaatcatat-aaatccataaaatcctttaaaatc 252  Q
    ||||||||||||||||||||||||||| ||| |||| ||||||||| ||| |||||    
T  23535837 ttaaaattcataaaatcttttgaaatcttataaaattcataaaatcatttcaaatc 23535782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 27899623 - 27899683
Alignment:
Q  163 agagtgtgttgtaatcatttcttttcaacgagtctttaaaattcataaaatcttttgaaatc 224  Q
    |||||||||| | ||||||| ||||||| || || |||||||||||||||||| ||||||||    
T  27899623 agagtgtgttatgatcattt-ttttcaatgaatccttaaaattcataaaatctgttgaaatc 27899683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 23753216 - 23753180
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  23753216 tattgagaatattatgatagagagtatgtcgtaatca 23753180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 32580514 - 32580550
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| | |||||||||    
T  32580514 tattgagaatattatgatagagagtatattgtaatca 32580550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 36673979 - 36673943
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  36673979 tattgagaatattatgatagagagtatgtcgtaatca 36673943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 37455220 - 37455256
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  37455220 tattgagaatattatgatagagagtatgtcgtaatca 37455256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 40897504 - 40897540
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  40897504 tattgagaatattatgatagagagtatgtcgtaatca 40897540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 44905682 - 44905646
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  44905682 tattgagaatattatgatagagagtatgtcgtaatca 44905646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 45863196 - 45863232
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  45863196 tattgagaatattatgatagagagtatgtcgtaatca 45863232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 6e-46; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 115 - 259
Target Start/End: Original strand, 20021744 - 20021889
Alignment:
Q  115 ataaaaataaa-taacaaataagagtctttattgagaatattatgatagagagtgtgttgtaatcatttcttttcaacgagtctttaaaattcataaaat 213  Q
    ||||||||||| ||| |||||||||| |  ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  20021744 ataaaaataaaataaaaaataagagtatgaattgaaaatattatgatagagagtgtgttgtaatcatttcttttcaatgagtccttaaaattcataaaat 20021843  T
Q  214 cttttgaaatcatataaatccataaaatcctttaaaatctgatgat 259  Q
    ||| ||||||| |||||||| ||||||||||||||||||| |||||    
T  20021844 cttgtgaaatcttataaatcgataaaatcctttaaaatcttatgat 20021889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 137 - 261
Target Start/End: Original strand, 12913645 - 12913768
Alignment:
Q  137 agtctttattgagaatattatgatagagagtgtgttgtaatcatttcttttcaacgagtctttaaaattcataaaatcttttgaaatcatataaatccat 236  Q
    ||||| |||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||| ||||||||||||||| |||||||||||    
T  12913645 agtctgtattgagaatattatgatagagagtgtgttgtaatcattcattttcaatgagtctttaaaattcat-aaatcttttgaaatcttataaatccat 12913743  T
Q  237 aaaatcctttaaaatctgatgatgt 261  Q
     |||||||||||||||| |||||||    
T  12913744 caaatcctttaaaatcttatgatgt 12913768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 137 - 252
Target Start/End: Original strand, 8712191 - 8712306
Alignment:
Q  137 agtctttattgagaatattatgatagagagtgtgttgtaatcatttcttttcaacgagtctttaaaattcataaaatcttttgaaatcatataaatccat 236  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||| ||||||| |||||||||| |||||||| ||    
T  8712191 agtctatattgagaatattatgatagagagtgtgttgtaataatttcttttcaatgagtccttaaaattaataaaatattttgaaatcttataaatcgat 8712290  T
Q  237 aaaatcctttaaaatc 252  Q
    |||||| ||| |||||    
T  8712291 aaaatcatttcaaatc 8712306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 134 - 261
Target Start/End: Complemental strand, 44770753 - 44770624
Alignment:
Q  134 aagagtctttattgagaatattatgatagagagtgtgttgtaatcatttctttt--caacgagtctttaaaattcataaaatcttttgaaatcatataaa 231  Q
    |||||| | |||||| |||||||||||||||| ||||||||||| |||||||||  |||  |||| ||||||||||||||||||||||||||| ||||||    
T  44770753 aagagtttgtattgaaaatattatgatagagaatgtgttgtaataatttctttttgcaataagtccttaaaattcataaaatcttttgaaatcttataaa 44770654  T
Q  232 tccataaaatcctttaaaatctgatgatgt 261  Q
    |||| ||||||||||||||||| |||||||    
T  44770653 tccacaaaatcctttaaaatcttatgatgt 44770624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 115 - 242
Target Start/End: Complemental strand, 36479211 - 36479084
Alignment:
Q  115 ataaaaataaataacaaataagagtctttattgagaatattatgatagagagtgtgttgtaatcatttcttttcaacgagtctttaaaattcataaaatc 214  Q
    |||||||||||  | |||||||||||| |||||| |||||||||||||||||||| |||||||||||  |||| || ||||| |||||||||||||||||    
T  36479211 ataaaaataaaacaaaaataagagtctgtattgataatattatgatagagagtgttttgtaatcattcatttttaatgagtccttaaaattcataaaatc 36479112  T
Q  215 ttttgaaatcatataaatccataaaatc 242  Q
    ||| |||||| |||||||| ||||||||    
T  36479111 tttagaaatcttataaatctataaaatc 36479084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 123 - 216
Target Start/End: Complemental strand, 56444635 - 56444542
Alignment:
Q  123 aaataacaaataagagtctttattgagaatattatgatagagagtgtgttgtaatcatttcttttcaacgagtctttaaaattcataaaatctt 216  Q
    |||||| |||||||||||| |||| |||||||||| |||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||    
T  56444635 aaataaaaaataagagtctctattaagaatattataatagagagtgtgctgtaatcatttcttttcaatgagtccttaaaattcataaaatctt 56444542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 134 - 234
Target Start/End: Complemental strand, 36727777 - 36727677
Alignment:
Q  134 aagagtctttattgagaatattatgatagagagtgtgttgtaatcatttcttttcaacgagtctttaaaattcataaaatcttttgaaatcatataaatc 233  Q
    |||||| | ||||||||||||||||||||||||||||||| |||||||  ||||||| |||| |||||||||||||||||||||||||||  ||||||||    
T  36727777 aagagtttgtattgagaatattatgatagagagtgtgttgcaatcattcattttcaatgagtttttaaaattcataaaatcttttgaaattttataaatc 36727678  T
Q  234 c 234  Q
    |    
T  36727677 c 36727677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 131 - 261
Target Start/End: Original strand, 28371229 - 28371363
Alignment:
Q  131 aataagagtctttattgagaatattatgatagagagtgtgttgtaatcatttc--ttttcaacgagtctttaaaatt-cataaaat-cttttgaaatcat 226  Q
    ||||||||| | |||||| |||||||||||||||||| ||||||||| |||||  |||||||  |||| |||||||| |||||||| ||||||||||| |    
T  28371229 aataagagtttgtattgaaaatattatgatagagagtttgttgtaataatttcttttttcaataagtccttaaaattacataaaatacttttgaaatctt 28371328  T
Q  227 ataaatccataaaatcctttaaaatctgatgatgt 261  Q
    ||||||||| ||||||||||||||||| |||||||    
T  28371329 ataaatccacaaaatcctttaaaatcttatgatgt 28371363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 224
Target Start/End: Original strand, 11090632 - 11090707
Alignment:
Q  149 gaatattatgatagagagtgtgttgtaatcatttcttttcaacgagtctttaaaattcataaaatcttttgaaatc 224  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||| || ||||  |||||||| ||| |||||    
T  11090632 gaatattatgatagagagtgtgttgtaaccatttcttttcaatgagtcattcaaatctataaaatcattttaaatc 11090707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 231
Target Start/End: Original strand, 9163509 - 9163594
Alignment:
Q  144 attgagaatattatgatagagagtgtgttgtaatcatttcttttcaacgagtctttaaaattcataaaatcttttgaaatcatataaa 231  Q
    |||||||||||| ||| | |||||||||| ||||||||| |||  || || ||||||||||| |||||||||||||||||| ||||||    
T  9163509 attgagaatattgtgaaaaagagtgtgttataatcattttttt--aatgaatctttaaaatttataaaatcttttgaaatcttataaa 9163594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 224
Target Start/End: Complemental strand, 40536819 - 40536731
Alignment:
Q  134 aagagtctttattgagaatattatgatagagagtgtgttgtaatcatttcttttcaacgagtctttaaaattcataaaatcttttgaaatc 224  Q
    ||||||||||||||||| | || ||| |||||||||||| ||||||||| |||||||  | |  |||||||||||||||||| ||||||||    
T  40536819 aagagtctttattgagatt-ttgtgaaagagagtgtgttataatcattt-ttttcaattatttcttaaaattcataaaatctgttgaaatc 40536731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 252
Target Start/End: Original strand, 49469630 - 49469749
Alignment:
Q  132 ataagagtctttattgagaatattatgatagagagtgtgttgtaatcatttcttttcaacgagtctttaaaattcataaaatcttttgaaatc-atataa 230  Q
    ||||||||||||||||||| | || ||| |||||||||||| | || |||| |||||||  | |  |||||||||||||||||||||||||||  |  ||    
T  49469630 ataagagtctttattgagatt-ttgtgaaagagagtgtgttatgat-attttttttcaattatttcttaaaattcataaaatcttttgaaatctcttgaa 49469727  T
Q  231 atccataaaatcctttaaaatc 252  Q
    |||||||||||| ||| |||||    
T  49469728 atccataaaatcatttcaaatc 49469749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 177
Target Start/End: Original strand, 28484270 - 28484304
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaat 177  Q
    ||||||||||||||||||||||||| |||||||||    
T  28484270 tattgagaatattatgatagagagtatgttgtaat 28484304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 39307087 - 39307038
Alignment:
Q  174 taatcatttcttttcaacgagtctttaaaattcataaaatcttttgaaat 223  Q
    ||||||||||||| ||| || |  ||||||||||||||||||||||||||    
T  39307087 taatcatttctttccaatgaattcttaaaattcataaaatcttttgaaat 39307038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 5441777 - 5441813
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  5441777 tattgagaatattatgatagagagtatgtcgtaatca 5441813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 5800339 - 5800375
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  5800339 tattgagaatattattatagagagtatgttgtaatca 5800375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 27768439 - 27768475
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  27768439 tattgagaatattatgatagagagtatgtcgtaatca 27768475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 30967169 - 30967133
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  30967169 tattgagaatattatgatagagagtatgtcgtaatca 30967133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 32322441 - 32322477
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  32322441 tattgagaatattatgatagagagtatgtcgtaatca 32322477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 32683853 - 32683817
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  32683853 tattgagaatattatgatagagagtatgtcgtaatca 32683817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 37828256 - 37828220
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  37828256 tattgagaatattatgatagagagtatgtcgtaatca 37828220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 41725488 - 41725524
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  41725488 tattgagaatattatgatagagagtatgtcgtaatca 41725524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 49834660 - 49834624
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  49834660 tattgagaatattatgatagagagtatgtcgtaatca 49834624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 54341517 - 54341553
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  54341517 tattgagaatattatgatagagagtatgtcgtaatca 54341553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 54853302 - 54853266
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  54853302 tattgagaatattatgatagagagtatgtcgtaatca 54853266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 9e-42; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 115 - 261
Target Start/End: Complemental strand, 39189738 - 39189590
Alignment:
Q  115 ataaaaataaa-taacaaataagagtctttattgagaatattatgatagagagtgtgt--tgtaatcatttcttttcaacgagtctttaaaattcataaa 211  Q
    ||||||||||| ||| |||||||||||| |||||||||||||||||||||| ||||||  |||||| |||||||||||||||||| ||||||||||| ||    
T  39189738 ataaaaataaaataaaaaataagagtctgtattgagaatattatgatagagtgtgtgtgttgtaattatttcttttcaacgagtccttaaaattcat-aa 39189640  T
Q  212 atcttttgaaatcatataaatccataaaatcctttaaaatctgatgatgt 261  Q
    ||||||||||||| |||||||  ||||||||||||||||||| |||||||    
T  39189639 atcttttgaaatcttataaatttataaaatcctttaaaatcttatgatgt 39189590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 134 - 241
Target Start/End: Complemental strand, 29977011 - 29976904
Alignment:
Q  134 aagagtctttattgagaatattatgatagagagtgtgttgtaatcatttcttttcaacgagtctttaaaattcataaaatcttttgaaatcatataaatc 233  Q
    |||||||| | ||||||||||| ||| ||| ||||| || ||||||||| ||||||||||||| | ||||||||||||||||| ||||||| || |||||    
T  29977011 aagagtctatgttgagaatattgtgaaagatagtgttttataatcatttattttcaacgagtcctaaaaattcataaaatcttgtgaaatcttaaaaatc 29976912  T
Q  234 cataaaat 241  Q
    ||||||||    
T  29976911 cataaaat 29976904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 234
Target Start/End: Original strand, 4403403 - 4403496
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatcatttcttttcaacgag--tctttaaaattcataaaatcttttgaaatcatataaatcc 234  Q
    ||||||| |||||| |||||||| | |  ||||||||||| ||||||| |||  || || |||||||||||||||||||||||| |||||||||    
T  4403403 tattgagtatattacgatagagaatatactgtaatcatttgttttcaatgagagtccttcaaattcataaaatcttttgaaatcttataaatcc 4403496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 14028188 - 14028112
Alignment:
Q  163 agagtgtgttgtaatcatttcttttcaacgagtctttaaaattcataaaatcttttgaaatcatataaatccataaa 239  Q
    |||||||||| ||||||||| | ||||| || |  |||||||| |||||||||||||||||| |||||||| |||||    
T  14028188 agagtgtgttataatcatttttcttcaatgatttattaaaatttataaaatcttttgaaatcttataaatcaataaa 14028112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 251
Target Start/End: Complemental strand, 13478156 - 13478038
Alignment:
Q  131 aataagagtctttattgagaatattatgatagagagtgtgttgtaatcatttcttttcaacgagtctttaaaattcataaaatcttttgaaatcatat-a 229  Q
    ||||||||| | | ||||||||||| | | ||| | |||||| ||||||||| ||   |||||||| ||||||||||||||||||||||||||  ||| |    
T  13478156 aataagagtttatgttgagaatattgtaaaagataatgtgttataatcatttttt---aacgagtccttaaaattcataaaatcttttgaaattttataa 13478060  T
Q  230 aatccataaaatcctttaaaat 251  Q
    ||| ||||||||| ||| ||||    
T  13478059 aattcataaaatcatttcaaat 13478038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 252
Target Start/End: Complemental strand, 29930548 - 29930463
Alignment:
Q  167 tgtgttgtaatcatttcttttcaacgagtctttaaaattcataaaatcttttgaaatcatataaatccataaaatcctttaaaatc 252  Q
    |||||| |||| ||||||||||   ||||| ||| ||||||||| ||||||||||||| ||||||| | ||||||| || ||||||    
T  29930548 tgtgttataataatttcttttctctgagtcattataattcataagatcttttgaaatcttataaattcgtaaaatctttgaaaatc 29930463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 4949782 - 4949742
Alignment:
Q  176 atcatttcttttcaacgagtctttaaaattcataaaatctt 216  Q
    ||||||||||||||||||||| |||||||| ||||||||||    
T  4949782 atcatttcttttcaacgagtccttaaaatttataaaatctt 4949742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 252
Target Start/End: Complemental strand, 8410104 - 8409987
Alignment:
Q  134 aagagtctttattgagaatattatgatagagagtgtgttgtaatcatttcttttcaacgagtctttaaaattcataaaatcttttgaaatcatataaatc 233  Q
    |||||| | ||||||||||||| ||  |||||| ||||| |||| |||| |||||| |||  | || |||||||||||||||| | ||||| ||||||      
T  8410104 aagagtttgtattgagaatattgtggaagagagcgtgttataataatttgttttca-cgaagccttcaaattcataaaatcttctaaaatcttataaact 8410006  T
Q  234 cataaaatcctttaaaatc 252  Q
    ||||||||| ||| |||||    
T  8410005 cataaaatcttttgaaatc 8409987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 181
Target Start/End: Complemental strand, 43308334 - 43308296
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatcatt 181  Q
    ||||||||||||||||||||||||| ||| |||||||||    
T  43308334 tattgagaatattatgatagagagtatgtcgtaatcatt 43308296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 9288320 - 9288284
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  9288320 tattgagaatattatgatagagagtatgtcgtaatca 9288284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 14781958 - 14781922
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  14781958 tattgagaatattatgatagagagtatgtcgtaatca 14781922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 18958553 - 18958517
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  18958553 tattgagaatattatgatagagagtatgtcgtaatca 18958517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 19717700 - 19717664
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  19717700 tattgagaatattatgatagagagtatgtcgtaatca 19717664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 32497916 - 32497952
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  32497916 tattgagaatattatgatagagagtatgtcgtaatca 32497952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 39467344 - 39467308
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  39467344 tattgagaatattatgatagagagtatgtcgtaatca 39467308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 241
Target Start/End: Original strand, 41070372 - 41070416
Alignment:
Q  198 ttaaaattcataaaatcttttgaaatcatat-aaatccataaaat 241  Q
    ||||||||||||||| ||||||||||| ||| |||||||||||||    
T  41070372 ttaaaattcataaaaacttttgaaatcttataaaatccataaaat 41070416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 42305430 - 42305394
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  42305430 tattgagaatattatgatagagagtatgtcgtaatca 42305394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 44725617 - 44725581
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  44725617 tattgagaatattatgatagagagtatgtcgtaatca 44725581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 130 - 252
Target Start/End: Complemental strand, 9577375 - 9577254
Alignment:
Q  130 aaataagagtctttattgagaatattatgatagagagtgtgttgtaatcatttcttttcaacgagtctttaaaattcataaaatcttttgaaatcatata 229  Q
    |||||||||| | ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||    
T  9577375 aaataagagtatgtattgagaatattatgaaagagagtgtgt-gtaatcatttcatttcaacgagtctttaaaattcataaaatattttgaaatcttata 9577277  T
Q  230 aatccataaaatcctttaaaatc 252  Q
    ||||||||||||| ||| |||||    
T  9577276 aatccataaaatcattttaaatc 9577254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 134 - 251
Target Start/End: Original strand, 47784638 - 47784757
Alignment:
Q  134 aagagtctttattgagaatattatgatagagagtgtgttg-taatcatttcttttcaacgagtctttaaaattcataaaatcttttgaaatcatat-aaa 231  Q
    |||||| | |||||| |||||| ||| ||||| ||||||  |||||||||||| |||| || || ||||||||||||||||||||||||||| ||| |||    
T  47784638 aagagtttgtattgaaaatattgtgaaagagaatgtgtttataatcatttcttctcaatgaatcattaaaattcataaaatcttttgaaatcttataaaa 47784737  T
Q  232 tccataaaatcctttaaaat 251  Q
    ||||||||||| ||| ||||    
T  47784738 tccataaaatcatttcaaat 47784757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 223
Target Start/End: Complemental strand, 31622507 - 31622446
Alignment:
Q  161 agagagtgtgttgtaatcatttcttttcaacgagtctttaaaattcataaaatcttttgaaat 223  Q
    |||||||||||| | || |||| ||||||| ||||||||||||||| ||||||||||||||||    
T  31622507 agagagtgtgttttgattattt-ttttcaatgagtctttaaaattcgtaaaatcttttgaaat 31622446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 212
Target Start/End: Complemental strand, 37014529 - 37014451
Alignment:
Q  134 aagagtctttattgagaatattatgatagagagtgtgttgtaatcatttcttttcaacgagtctttaaaattcataaaa 212  Q
    |||||||| ||||||||||||| | | |||||||||||| |||| |||||||| ||  || || |||||||||||||||    
T  37014529 aagagtctgtattgagaatattgtaaaagagagtgtgttataataatttctttccagtgaatccttaaaattcataaaa 37014451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 45272941 - 45272977
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| |||||||||||    
T  45272941 tattgagaatattatgatagagagtatgttgtaatca 45272977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 226
Target Start/End: Original strand, 955921 - 956011
Alignment:
Q  134 aagagtctttattgagaatattatgatagagagtgtgttgtaatcatttcttttcaacgagtctttaaaattcataaaatcttttgaaatcat 226  Q
    ||||||||||||||||| | || ||| |||||||||||| | || |||| |||||||  | |  |||||||||||||||||| ||||||||||    
T  955921 aagagtctttattgagatt-ttgtgaaagagagtgtgttatgat-attttttttcaattatttcttaaaattcataaaatctgttgaaatcat 956011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 5494922 - 5494886
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    |||||||||||||||||||||||||  ||||||||||    
T  5494922 tattgagaatattatgatagagagtacgttgtaatca 5494886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 6312950 - 6312986
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  6312950 tattgagaatattatgatagagagtatgtcgtaatca 6312986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 9322332 - 9322296
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  9322332 tattgagaatattatgatagagagtatgtcgtaatca 9322296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 15834858 - 15834822
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  15834858 tattgagaatattatgatagagagtatgtcgtaatca 15834822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 25612466 - 25612502
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  25612466 tattgagaatattatgatagagagtatgtcgtaatca 25612502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 25831073 - 25831037
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  25831073 tattgagaatattatgatagagagtatgtcgtaatca 25831037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 28387241 - 28387205
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  28387241 tattgagaatattatgatagagagtatgtcgtaatca 28387205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 29396258 - 29396222
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  29396258 tattgagaatattatgatagagagtatgtcgtaatca 29396222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 38535970 - 38535934
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  38535970 tattgagaatattatgatagagagtatgtcgtaatca 38535934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 38558188 - 38558152
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  38558188 tattgagaatattatgatagagagtatgtcgtaatca 38558152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 51701969 - 51702005
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  51701969 tattgagaatattatgatagagagtatgtcgtaatca 51702005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 149 - 261
Target Start/End: Original strand, 8408544 - 8408654
Alignment:
Q  149 gaatattatgatagagagtgtgttgtaatcatttcttttcaacgagtctttaaaattcataaaatcttttgaaatcatataaatccataaaatcctttaa 248  Q
    ||||||||||||||||  ||||||||||| |||||||||||| ||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  8408544 gaatattatgatagag--tgtgttgtaataatttcttttcaatgagtccttaaaattaataaaatcttttgaaatcttataaatccataaaatcctttaa 8408641  T
Q  249 aatctgatgatgt 261  Q
    ||||| |||||||    
T  8408642 aatcttatgatgt 8408654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 9691221 - 9691280
Alignment:
Q  161 agagagtgtgttgtaatcatttcttttcaacgagtctttaaaattcataaaatcttttgaa 221  Q
    ||||| |||||||| ||||||| |||||||| |||| ||||||||||||||||||||||||    
T  9691221 agagattgtgttgtgatcattt-ttttcaacaagtccttaaaattcataaaatcttttgaa 9691280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 24923367 - 24923303
Alignment:
Q  161 agagagtgtgttgtaatcatttcttttcaacgagtctttaaaattcataaaatcttttgaaatca 225  Q
    |||||||||||| |||||||||||| | ||||||  |||| ||||| |||||| |||||||||||    
T  24923367 agagagtgtgttataatcatttcttcttaacgaggatttagaattcctaaaatgttttgaaatca 24923303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 4240293 - 4240257
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  4240293 tattgagaatattatgatagagagtatgtcgtaatca 4240257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 5949487 - 5949523
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  5949487 tattgagaatattatgatagagagtatgtcgtaatca 5949523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 13926306 - 13926342
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  13926306 tattgagaatattatgatagagagtatgtcgtaatca 13926342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 13999921 - 13999885
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  13999921 tattgagaatattatgatagagagtatgtcgtaatca 13999885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 37014229 - 37014265
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  37014229 tattgagaatattatgatagagagtatgtcgtaatca 37014265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 39852745 - 39852781
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  39852745 tattgagaatattatgatagagagtatgtcgtaatca 39852781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 117 - 252
Target Start/End: Original strand, 10617180 - 10617315
Alignment:
Q  117 aaaaataaataacaaataagagtctttattgagaatattatgatagagagtgtgttgtaatcatttcttttcaacgagtctttaaaattcataaaatctt 216  Q
    ||||| |||||| ||  |||||||| |||| | |||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| ||||    
T  10617180 aaaaaaaaataaaaatcaagagtctgtattaaaaatattatgatagagagtgtgttgtaatcatttctttttaatgagtccttaaaattcataaactctt 10617279  T
Q  217 ttgaaatcatataaatccataaaatcctttaaaatc 252  Q
    |||||||  ||||||||||||||||| ||| |||||    
T  10617280 ttgaaattttataaatccataaaatcatttcaaatc 10617315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 123 - 238
Target Start/End: Original strand, 10068765 - 10068881
Alignment:
Q  123 aaataacaaataagagtctttattgagaatattatgatagagagtgtgttgtaatcatttcttttcaacgagtctttaa-aattcataaaatcttttgaa 221  Q
    |||||| |||||||||| | ||||||||||||||||||| |||||||||| |||| ||||||||||||||||| ||||| ||||||||||||||||||||    
T  10068765 aaataaaaaataagagtttatattgagaatattatgataaagagtgtgttctaataatttcttttcaacgagtttttaagaattcataaaatcttttgaa 10068864  T
Q  222 atcatataaatccataa 238  Q
    ||| ||||||| |||||    
T  10068865 atcttataaattcataa 10068881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 123 - 251
Target Start/End: Complemental strand, 3796990 - 3796862
Alignment:
Q  123 aaataacaaataagagtctttattgagaatattatgatagagagtgtgttgtaatcatttcttttcaacgagtctttaaaa-ttcataaaatcttttgaa 221  Q
    |||||| |||||||||| | | |||||||||||||  ||||||||||||||||||||||| ||||| |||| ||||||||| ||||||||||||||||||    
T  3796990 aaataaaaaataagagt-tgtgttgagaatattattgtagagagtgtgttgtaatcattttttttcgacgattctttaaaaattcataaaatcttttgaa 3796892  T
Q  222 atcatataaatccataaaatcctttaaaat 251  Q
    ||| ||||||||||||||||| ||| ||||    
T  3796891 atcttataaatccataaaatcatttcaaat 3796862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 137 - 224
Target Start/End: Complemental strand, 43187180 - 43187093
Alignment:
Q  137 agtctttattgagaatattatgatagagagtgtgttgtaatcatttcttttcaacgagtctttaaaattcataaaatcttttgaaatc 224  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||    
T  43187180 agtctgtattgagaatattacgatagagagtgtgttgtaatcattcattttcaatgagtctttaaaattcataaaatcttttgaaatc 43187093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 115 - 242
Target Start/End: Original strand, 19251828 - 19251955
Alignment:
Q  115 ataaaaataaataac-aaataagagtctttattgagaatattatga--tagagagtgtgttgtaatcatttcttttcaacgagtctttaaaattcataaa 211  Q
    ||||||||||||||  |||||||||| | |||| |||||||||| |  ||||||||||||| |   |||||||||| || ||||| ||||||||||||||    
T  19251828 ataaaaataaataaataaataagagtttgtattaagaatattataaattagagagtgtgtttt---catttctttttaaagagtccttaaaattcataaa 19251924  T
Q  212 atcttttgaaatcatataaatccataaaatc 242  Q
    ||||||||||||| ||||||| |||||||||    
T  19251925 atcttttgaaatcttataaattcataaaatc 19251955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 12963979 - 12964036
Alignment:
Q  130 aaataagagtctttattgagaatattatgatagagagtgtgttgtaatcatttctttt 187  Q
    |||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  12963979 aaataatagtctgtattgagaatgttatgatagagagtgtgttgtaatcatttctttt 12964036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 43863644 - 43863711
Alignment:
Q  174 taatcatttcttttcaacgagtctttaaaattcataaaatcttttgaaatcatataaatccataaaat 241  Q
    ||||||||| | |||||||| || |||||||||||| |||||||||||||| ||||||||||||||||    
T  43863644 taatcatttatcttcaacgattccttaaaattcatacaatcttttgaaatcttataaatccataaaat 43863711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 251
Target Start/End: Original strand, 45272745 - 45272848
Alignment:
Q  145 ttgagaatattatgatagagagtgtgttgtaatcatttcttttcaacgagtctttaaaattcataaaatcttttgaaatcatataaatccataaaatcct 244  Q
    ||||||| ||| ||||||||||||  || |||||||||||||| || ||  ||||||||||||| |||   ||||||||| ||||||||||||||||| |    
T  45272745 ttgagaacattgtgatagagagtgaattataatcatttctttttaatgaaactttaaaattcatgaaa---tttgaaatcttataaatccataaaatctt 45272841  T
Q  245 ttaaaat 251  Q
    || ||||    
T  45272842 ttgaaat 45272848  T

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Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 19811027 - 19811071
Alignment:
Q  198 ttaaaattcataaaatcttttgaaatcatataaatccataaaatc 242  Q
    ||||||||||||||||||||||||||  |||||||||||||||||    
T  19811027 ttaaaattcataaaatcttttgaaatattataaatccataaaatc 19811071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 44623088 - 44623028
Alignment:
Q  171 ttgtaatcatttcttttcaacgagtctttaaaattcataaaatcttttgaaatcatataaa 231  Q
    |||||||||||||||| ||| || || ||||||||||| ||||||||||||||| ||||||    
T  44623088 ttgtaatcatttctttccaatgaatccttaaaattcattaaatcttttgaaatcttataaa 44623028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 8675704 - 8675740
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| |||||||||||    
T  8675704 tattgagaatattatgatagagagtatgttgtaatca 8675740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 258
Target Start/End: Original strand, 12893861 - 12893923
Alignment:
Q  197 tttaaaattcataaaatcttttgaaatc-atataaatccataaaatcctttaaaatctgatga 258  Q
    ||||||||||||||||||| ||||||||  |  |||||||||||||| |||||||||| ||||    
T  12893861 tttaaaattcataaaatctgttgaaatctcttgaaatccataaaatcttttaaaatcttatga 12893923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 231
Target Start/End: Complemental strand, 1470094 - 1469999
Alignment:
Q  134 aagagtctttattgagaatattatgatagagagtgtgttgtaatcatttcttttcaacgagtctttaaaattcataaaatcttttgaaatcatataaa 231  Q
    |||||| ||| |||||||||||  || ||| |||||||| ||||  ||| |||||||  ||||||||||||||||||||| || ||||||| ||||||    
T  1470094 aagagtatttgttgagaatattgcga-agacagtgtgttataattgttt-ttttcaattagtctttaaaattcataaaattttatgaaatcttataaa 1469999  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 510019 - 510055
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  510019 tattgagaatattatgatagagagtatgtcgtaatca 510055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 23101664 - 23101700
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  23101664 tattgagaatattatgatagagagtatgtcgtaatca 23101700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 28034680 - 28034644
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  28034680 tattgagaatattatgatagagagtatgtcgtaatca 28034644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 28342684 - 28342720
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  28342684 tattgagaatattatgatagagagtatgtcgtaatca 28342720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 29614627 - 29614591
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  29614627 tattgagaatattatgatagagagtatgtcgtaatca 29614591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 32884144 - 32884180
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  32884144 tattgagaatattatgatagagagtatgtcgtaatca 32884180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 33383047 - 33383083
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  33383047 tattgtgaatattatgatagagagtatgttgtaatca 33383083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 37972709 - 37972673
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    |||||||| |||||||||||||||| |||||||||||    
T  37972709 tattgagagtattatgatagagagtatgttgtaatca 37972673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 39028460 - 39028496
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  39028460 tattgagaatattatgatagagagtatgtcgtaatca 39028496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 40460546 - 40460510
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  40460546 tattgagaatattatgatagagagtatgtcgtaatca 40460510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 41827701 - 41827737
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  41827701 tattgagaatattatgatagagagtatgtcgtaatca 41827737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 44121765 - 44121729
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  44121765 tattgagaatattatgatagaaagtgtgtcgtaatca 44121729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 130 - 242
Target Start/End: Complemental strand, 10125235 - 10125123
Alignment:
Q  130 aaataagagtctttattgagaatattatgatagagagtgtgttgtaatcatttcttttcaacgagtctttaaaattcataaaatcttttgaaatcatata 229  Q
    |||||||| ||| |||| ||||||||| ||||||||||||||| |||| ||||||||| || || |  ||||||||||||||||||||||||||| || |    
T  10125235 aaataagaatctatatttagaatattacgatagagagtgtgttataataatttctttttaatgaattcttaaaattcataaaatcttttgaaatcttaca 10125136  T
Q  230 aatccataaaatc 242  Q
    |||||||||||||    
T  10125135 aatccataaaatc 10125123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 13436287 - 13436220
Alignment:
Q  175 aatcatttcttttcaacgagtctttaaaattcataaaatcttttgaaatcatataaatccataaaatc 242  Q
    |||| ||| |||||||  |||| ||||||||||||||||||||| ||||| |||||||| ||||||||    
T  13436287 aatcctttattttcaataagtccttaaaattcataaaatcttttaaaatcttataaatctataaaatc 13436220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 379305 - 379341
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  379305 tattgagaatattatgatagagagtatgtcgtaatca 379341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 7027278 - 7027314
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  7027278 tattgagaatattatgatagagagtatgtcgtaatca 7027314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 13833246 - 13833210
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  13833246 tattgagaatattatgatagagagtatgtcgtaatca 13833210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 11113448 - 11113391
Alignment:
Q  165 agtgtgttgtaatcatttcttttcaacgagtctttaaaattcataaaatcttttgaaat 223  Q
    |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  11113448 agtgtgttataatcatttcttttcaatgagtctttaaaattcat-aaatcttttgaaat 11113391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 224
Target Start/End: Original strand, 7052215 - 7052294
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatcatttcttttcaacgagtctttaaaattcataaaatcttttgaaatc 224  Q
    ||||||||||| | | | |||||||||||| | ||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  7052215 tattgagaatagtgtaaaagagagtgtgtt-tgatcattt-ttttcaatgagtctttaaaattcataaaatcttttgaaatc 7052294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 4200278 - 4200242
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  4200278 tattgagaatattatgatagagagtatgtcgtaatca 4200242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 7497472 - 7497508
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  7497472 tattgagaatattatgatagagagtatgtcgtaatca 7497508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 14262263 - 14262227
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  14262263 tattgagaatattatgatagagagtatgtcgtaatca 14262227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 31896011 - 31896047
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  31896011 tattgagaatattatgatagagagtatgtcgtaatca 31896047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 34758906 - 34758870
Alignment:
Q  143 tattgagaatattatgatagagagtgtgttgtaatca 179  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  34758906 tattgagaatattatgatagagagtatgtcgtaatca 34758870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 252
Target Start/End: Complemental strand, 14844 - 14727
Alignment:
Q  134 aagagtctttattgagaatattatgatagagagtgtgttgtaatcatttcttttcaacgagtctttaaaattcataaaatcttttgaaatc-atataaat 232  Q
    ||||||||||||||||| | || ||| |||||||||||| | || |||| |||||||| | |  |||||||||||||||||| ||||||||  |  ||||    
T  14844 aagagtctttattgagatt-ttgtgaaagagagtgtgttatgat-attttttttcaactatttcttaaaattcataaaatctgttgaaatctcttgaaat 14747  T
Q  233 ccataaaatcctttaaaatc 252  Q
    |||||||||| ||| |||||    
T  14746 ccataaaatcatttcaaatc 14727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 252
Target Start/End: Complemental strand, 15487 - 15370
Alignment:
Q  134 aagagtctttattgagaatattatgatagagagtgtgttgtaatcatttcttttcaacgagtctttaaaattcataaaatcttttgaaatc-atataaat 232  Q
    ||||||||||||||||| | || ||| |||||||||||| | || |||| |||||||| | |  |||||||||||||||||| ||||||||  |  ||||    
T  15487 aagagtctttattgagatt-ttgtgaaagagagtgtgttatgat-attttttttcaactatttcttaaaattcataaaatctgttgaaatctcttgaaat 15390  T
Q  233 ccataaaatcctttaaaatc 252  Q
    |||||||||| ||| |||||    
T  15389 ccataaaatcatttcaaatc 15370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 252
Target Start/End: Complemental strand, 24796 - 24679
Alignment:
Q  134 aagagtctttattgagaatattatgatagagagtgtgttgtaatcatttcttttcaacgagtctttaaaattcataaaatcttttgaaatcatat-aaat 232  Q
    ||||||||||||||||| | || ||| |||||||||||| | || |||| |||||||  | |  ||||||||||||||||||||||||||  | | ||||    
T  24796 aagagtctttattgagatt-ttgtgaaagagagtgtgttatgat-attttttttcaattatttcttaaaattcataaaatcttttgaaattttttgaaat 24699  T
Q  233 ccataaaatcctttaaaatc 252  Q
    |||||||||| ||| |||||    
T  24698 ccataaaatcatttcaaatc 24679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 252
Target Start/End: Complemental strand, 37313 - 37196
Alignment:
Q  134 aagagtctttattgagaatattatgatagagagtgtgttgtaatcatttcttttcaacgagtctttaaaattcataaaatcttttgaaatcatat-aaat 232  Q
    ||||||||||||||||| | || ||| |||||||||||| | || |||| |||||||  | |  ||||||||||||||||||||||||||  | | ||||    
T  37313 aagagtctttattgagatt-ttgtgaaagagagtgtgttatgat-attttttttcaattatttcttaaaattcataaaatcttttgaaattttttgaaat 37216  T
Q  233 ccataaaatcctttaaaatc 252  Q
    |||||||||| ||| |||||    
T  37215 ccataaaatcatttcaaatc 37196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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