View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5188_low_4 (Length: 260)
Name: NF5188_low_4
Description: NF5188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5188_low_4 |
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| [»] scaffold1678 (1 HSPs) |
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| [»] scaffold0786 (1 HSPs) |
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| [»] scaffold0390 (2 HSPs) |
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Alignment Details
Target: scaffold1678 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: scaffold1678
Description:
Target: scaffold1678; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 1356 - 1113
Alignment:
| Q |
1 |
aaatcatgtccaagacagtaatagtaattatatttatttttccaaatagacaatacaaatttgaaagaggctccgaagttttatctcattcatttgttaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1356 |
aaatcatgtccaagacagtaatagtaattatatttatttttccaaatagataatacaaatttgaaagaggctccgaagttttatctcattcatttgttaa |
1257 |
T |
|
| Q |
101 |
gtcaaataaatcaatggtgtaaaatcaaaatatgagcaagtctttctcattccaattataacaaactccataattagttaattaccacacacaaacgatt |
200 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1256 |
gtcaaataaatcaatggtgtaaaatataaatatgagcaagtctttctcattccaattataacaaactccataattagttaattaccacacacaaacgatt |
1157 |
T |
|
| Q |
201 |
ggaccaagattcttgcatgctcctacataagactttgtagtatc |
244 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1156 |
ggaccaagattcttgcatgctcctacataagactttgtagtatc |
1113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0786 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: scaffold0786
Description:
Target: scaffold0786; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 28 - 244
Target Start/End: Original strand, 3171 - 3387
Alignment:
| Q |
28 |
ttatatttatttttccaaatagacaatacaaatttgaaagaggctccgaagttttatctcattcatttgttaagtcaaataaatcaatggtgtaaaatca |
127 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| | ||||||| |
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| T |
3171 |
ttatatttatttttccaaataggcaatacaaatttgaaagaggctccaaagttttatctcattcatttgttaagtcaaataaaccaatggcggaaaatca |
3270 |
T |
|
| Q |
128 |
aaatatgagcaagtctttctcattccaattataacaaactccataattagttaattaccacacacaaacgattggaccaagattcttgcatgctcctaca |
227 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
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| T |
3271 |
aaatatgagcaagtgtttctcattccaaatataacaaactccataattagttaattaccacacacaaacgattggaccaagattattgcatgctcctata |
3370 |
T |
|
| Q |
228 |
taagactttgtagtatc |
244 |
Q |
| |
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|||| ||| |||||||| |
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|
| T |
3371 |
taagtcttggtagtatc |
3387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 28 - 244
Target Start/End: Complemental strand, 22139561 - 22139345
Alignment:
| Q |
28 |
ttatatttatttttccaaatagacaatacaaatttgaaagaggctccgaagttttatctcattcatttgttaagtcaaataaatcaatggtgtaaaatca |
127 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| | ||||||| |
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|
| T |
22139561 |
ttatatttatttttccaaataggcaatacaaatttgaaagaggctccaaagttttatctcattcatttgttaagtcaaataaaccaatggcggaaaatca |
22139462 |
T |
|
| Q |
128 |
aaatatgagcaagtctttctcattccaattataacaaactccataattagttaattaccacacacaaacgattggaccaagattcttgcatgctcctaca |
227 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
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|
| T |
22139461 |
aaatatgagcaagtgtttctcattccaaatataacaaactccataattagttaattaccacacacaaacgattggaccaagattattgcatgctcctata |
22139362 |
T |
|
| Q |
228 |
taagactttgtagtatc |
244 |
Q |
| |
|
|||| ||| |||||||| |
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|
| T |
22139361 |
taagtcttggtagtatc |
22139345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 32241724 - 32241493
Alignment:
| Q |
1 |
aaatcatgtccaagacagta-atagtaattatatttatttttccaaatagacaatacaaatttgaaagaggctccgaagttttatctcattcatttgtta |
99 |
Q |
| |
|
||||||||||||| ||| | ||||||||||||||||||| ||||||| | | |||||||||||||||||||||| || |||||||| || ||||||||| |
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|
| T |
32241724 |
aaatcatgtccaacacaattgatagtaattatatttatttctccaaattggctatacaaatttgaaagaggctccaaaattttatctaatgcatttgtta |
32241625 |
T |
|
| Q |
100 |
agtcaaataaatcaatggtgtaaaatcaaaatatgagcaagtctttctcattccaattataacaaactccataattagttaattaccacacacaaacgat |
199 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32241624 |
agtcaaataaaccaatggtgaaaaatcaaaatatgagcaagtctttctcattccaaatataacaaactccataattagttaattaccacacacaaacgat |
32241525 |
T |
|
| Q |
200 |
tggaccaagattcttgcatgctcctacataag |
231 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||| |
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|
| T |
32241524 |
tggaccaagattattgcatgctcctatataag |
32241493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 32294902 - 32295127
Alignment:
| Q |
19 |
taatagtaattatatttatttttccaaatagacaatacaaatttgaaagaggctccgaagttttatctcattcatttgttaagtcaaataaatcaatggt |
118 |
Q |
| |
|
||||||||||||||||| | ||| ||||||| ||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
32294902 |
taatagtaattatatttttattttcaaataggcaatacaaattggatagaggctccaaagttttatctcattcatttgttaagtcaaataaaccaatggt |
32295001 |
T |
|
| Q |
119 |
gtaaaatcaaaatatgagcaagtctttctcattccaattataacaaactccataattagttaattaccacacacaaacgattggaccaagattcttgcat |
218 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
32295002 |
tgaaactcaaaatatgagcaagtctttctcattccaaatataacaaaatccataattagttaattaccacacacaaacgattggaccaagattattgcat |
32295101 |
T |
|
| Q |
219 |
gctcctacataagactttgtagtatc |
244 |
Q |
| |
|
||||||| ||||||||| ||| |||| |
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| T |
32295102 |
gctcctatataagacttggtaatatc |
32295127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 24434079 - 24433863
Alignment:
| Q |
1 |
aaatcatgtccaagacagtaatagtaattatatttatttttccaaatagacaatacaaatttgaaagaggctccgaagttttatctcattcatttgttaa |
100 |
Q |
| |
|
||||||||||||| ||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24434079 |
aaatcatgtccaacacaatgatagtaattatatttatttttccaaataggcaatacaaatttgaaagaggctccgaaattttatctcattcatttgttaa |
24433980 |
T |
|
| Q |
101 |
gtcaaataaatcaatggtgtaaaatcaaaatatgagcaagtctttctcattccaattataacaaactccataattagttaattaccacacacaaacgatt |
200 |
Q |
| |
|
|||||||||| || ||||| ||||||||||||||||||| ||||||| |||| || ||||| ||||||||||||| |||||||||||||||||||||||| |
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|
| T |
24433979 |
gtcaaataaaccattggtggaaaatcaaaatatgagcaaatctttctgattctaaatataaaaaactccataatttgttaattaccacacacaaacgatt |
24433880 |
T |
|
| Q |
201 |
ggaccaagattcttgca |
217 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
24433879 |
ggaccaagattattgca |
24433863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 32293292 - 32293363
Alignment:
| Q |
20 |
aatagtaattatatttatttttc-caaatagacaatacaaatttgaaagaggctccgaagttttatctcatt |
90 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| ||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
32293292 |
aatagtaattatatttgtttttttcaaataggcaatacaaatttgaacgaggttccgaagttttatctcatt |
32293363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0390 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: scaffold0390
Description:
Target: scaffold0390; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 28 - 244
Target Start/End: Original strand, 1703 - 1919
Alignment:
| Q |
28 |
ttatatttatttttccaaatagacaatacaaatttgaaagaggctccgaagttttatctcattcatttgttaagtcaaataaatcaatggtgtaaaatca |
127 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| | ||||||| |
|
|
| T |
1703 |
ttatatttatttttccaaataggcaatacaaatttgaaagaggctccaaagttttatctcattcatttgttaagtcaaataaaccaatggcggaaaatca |
1802 |
T |
|
| Q |
128 |
aaatatgagcaagtctttctcattccaattataacaaactccataattagttaattaccacacacaaacgattggaccaagattcttgcatgctcctaca |
227 |
Q |
| |
|
|||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
1803 |
aaatatgagcaaatgtttctcattccaaatataacaaactccataattagttaattaccacacacaaacgattggaccaagattattgcatgctcctata |
1902 |
T |
|
| Q |
228 |
taagactttgtagtatc |
244 |
Q |
| |
|
|||| ||| |||||||| |
|
|
| T |
1903 |
taagtcttggtagtatc |
1919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0390; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 25 - 243
Target Start/End: Original strand, 14684 - 14902
Alignment:
| Q |
25 |
taattatatttatttttccaaatagacaatacaaatttgaaagaggctccgaagttttatctcattcatttgttaagtcaaataaatcaatggtgtaaaa |
124 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| | |||| |
|
|
| T |
14684 |
taattatatttatttttccaaataggcaatacaaatttgaaagaggctccaaagttttatctcattcatttgttaagtcaaataaacgaatggcggaaaa |
14783 |
T |
|
| Q |
125 |
tcaaaatatgagcaagtctttctcattccaattataacaaactccataattagttaattaccacacacaaacgattggaccaagattcttgcatgctcct |
224 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
14784 |
tcaaaatatgagcaagtgtttctcattccaaatataacaaaatccataattagttaattaccacacacaaacgattggaccaagattattgcatgctcct |
14883 |
T |
|
| Q |
225 |
acataagactttgtagtat |
243 |
Q |
| |
|
| ||||| ||| ||||||| |
|
|
| T |
14884 |
atataagtcttggtagtat |
14902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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