View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5189-Insertion-12 (Length: 320)
Name: NF5189-Insertion-12
Description: NF5189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5189-Insertion-12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 7 - 320
Target Start/End: Original strand, 34619723 - 34620040
Alignment:
| Q |
7 |
aaagtagtctgcttcctttgagttgtttaagaattaataaggtcatataatcacttttaagctaaaa-aagctgttttcattctgtaatcaacgagtcac |
105 |
Q |
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| T |
34619723 |
aaagtagtctgcttcctttgagttgtttaagaatta-taaggtcatataatcacttttaagctaaaaaaagctgttttcattctgtaatcaacgagtcac |
34619821 |
T |
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| Q |
106 |
taaatgtcaaacacaaacatttacaaagttattttgcaataattctaaatcctaaagggaatatattttcctcaattgcaccctatattatcattgttaa |
205 |
Q |
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| T |
34619822 |
taaatgtcaaacacaaacgtttacaaagttattttgcaataattctaaatcctaaagggaatatattttcctcaattgcaccctatattatcattgttaa |
34619921 |
T |
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| Q |
206 |
ttacctttctgacttgggcttgtaattatgtacatgtttaagcggt----gtttggcctaatgcttcattattcccaatgacggtgagaatctatcttta |
301 |
Q |
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| T |
34619922 |
ttacctttctgacttaggcttgtaattatgtacatgtttaagaggttttaatttggcctaatgcttcattattcccaatgacggtgagaatctatcttta |
34620021 |
T |
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| Q |
302 |
acacatttcatcattgtct |
320 |
Q |
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| T |
34620022 |
acacatttcatcattgtct |
34620040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 137 - 306
Target Start/End: Complemental strand, 51054757 - 51054589
Alignment:
| Q |
137 |
ttttgcaataattctaaatcctaaagggaatatattttc-ctcaattgcaccctatattatcattgttaattacctttctgacttgggcttgtaattatg |
235 |
Q |
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||||||||||||||||||| |||||||||||||||||| |||||||||||| | | || ||||||||||| ||||||||||||| |||||||||||| |
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| T |
51054757 |
ttttgcaataattctaaattctaaagggaatatattttttctcaattgcaccttttttttacattgttaattgcctttctgacttgtgcttgtaattata |
51054658 |
T |
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| Q |
236 |
tacatgtttaagcggtgtttggcctaatgcttcattattcccaatgacggtgagaatctatctttaacaca |
306 |
Q |
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| T |
51054657 |
ta--tgtttaagaggtttttggcctaatgcttcattattgccaatgacggtgagaatctatctttaacaca |
51054589 |
T |
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