View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5189-Insertion-4 (Length: 837)
Name: NF5189-Insertion-4
Description: NF5189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5189-Insertion-4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 622; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 7 - 837
Target Start/End: Complemental strand, 44248097 - 44247265
Alignment:
| Q |
7 |
atccttttccatttgctaaaagggttccaaagaatgtacaaaatgattgtgttcattggtgcttgccaggacctatagatacttggaatgagannnnnnn |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44248097 |
atccttttccatttgctaaaagggttccaaagaatgtacaaaatgattgtgttcattggtgcttgccaggacctatagatatttggaatgagattttttt |
44247998 |
T |
|
| Q |
107 |
gcagatgatgaaaaatgggaagaatcattcactgattgaaaagtgagacatttctcctatgttaattttgatcgagtaatgatttatcatgtttatttta |
206 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44247997 |
gcagatgatgaagaatgggaagaatcattcactgattgaaaagtgagacatttctcgtatgttaattttgatcgagtaatgatttatcatgtttatttta |
44247898 |
T |
|
| Q |
207 |
gattgtgatcgcttcatgcctaatgaaggatattgtttacannnnnnnnnnngaagtatattgtttacattatatcatacattgatatatttattatgag |
306 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44247897 |
gattgtgatcgtttcatgcctaatgaaggatattgtttacatttttttttttgaagtatattgtttacattatatcatacattgatatatttattatgag |
44247798 |
T |
|
| Q |
307 |
aacaaatttttgcttcttaatttaaagtttttacaaaaagaaattggcagataccattagtgtttgatagacnnnnnnnttacacgagaacaagatataa |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
44247797 |
aacaaatttttgcttcttaatttaaagtttttacaaaaagaaat-ggcagataccattagtgtttgatagacaaacaaattacacgaggacaagatataa |
44247699 |
T |
|
| Q |
407 |
atcataaatcatgacattnnnnnnnttgaaattaaatcaggacatgatagacaaattaaaagtgtggtagataccgttattgttttacaagtgagttttt |
506 |
Q |
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| T |
44247698 |
atcataaatcatgacattaaaaaaattgaaattaaatcaggacatgatagacaaattaaaaatgtggtagataccgttattgttttacaagtgagttttt |
44247599 |
T |
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| Q |
507 |
gaaagaaaaagaagtgaatgtttgcacttgcaccgttttaatcttcaaaataacatatgataaccta---cctcaattttatttttatttgaccaacctc |
603 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
44247598 |
gaaagaaaaagaagtgaatgtttgcacttgcaccgttttaatcttcaaaataacatatgataacctacctcctcaattttatttttatttgaccaacctc |
44247499 |
T |
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| Q |
604 |
aatatttagnnnnnnnaaaccttatccaattaaaatggatcctctcatgtaatatgagggttcgacgaaatcctccttgtttcatcatatcggagaggnn |
703 |
Q |
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| T |
44247498 |
aatatttagtttttttaaaccttatccaattaaaatggatcctctcatgtaatatgagggttcgacgaaatcctccttgtttcatcatatcggagaggaa |
44247399 |
T |
|
| Q |
704 |
nnnnnntttagagttaagaatgtggacatatccaattaaaacttagagnnnnnnnattcatcactggacatatcctccattgtttatttttactatatat |
803 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44247398 |
aaaaaatttagagttaagaatgtggacatatccaattaaaatttagagtttttttattcatcactggacatatcctccattgtttatttttactatatat |
44247299 |
T |
|
| Q |
804 |
taattacaatttagtgttaagaatgttttttaac |
837 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
44247298 |
taattacaatttagtgttaagaatgttttttaac |
44247265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 2e-30; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 7 - 99
Target Start/End: Original strand, 15284463 - 15284555
Alignment:
| Q |
7 |
atccttttccatttgctaaaagggttccaaagaatgtacaaaatgattgtgttcattggtgcttgccaggacctatagatacttggaatgaga |
99 |
Q |
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|||||||||||||||| || | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15284463 |
atccttttccatttgcaaatggagttccaaaatatgtacaaaatgattgtgttcattggtgcttgccaggacctatagatacttggaatgaga |
15284555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 7 - 99
Target Start/End: Complemental strand, 15287452 - 15287360
Alignment:
| Q |
7 |
atccttttccatttgctaaaagggttccaaagaatgtacaaaatgattgtgttcattggtgcttgccaggacctatagatacttggaatgaga |
99 |
Q |
| |
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|||||||||||||||| || | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15287452 |
atccttttccatttgcaaatggagttccaaaatatgtacaaaatgattgtgttcattggtgcttgccaggacctatagatacttggaatgaga |
15287360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 15262997 - 15263066
Alignment:
| Q |
30 |
gttccaaagaatgtacaaaatgattgtgttcattggtgcttgccaggacctatagatacttggaatgaga |
99 |
Q |
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||||||||| |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
15262997 |
gttccaaagtatgtgcaaaatgattgtgttcattggtgtttgcctggacctatagatacttggaatgaga |
15263066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 99
Target Start/End: Complemental strand, 15256740 - 15256689
Alignment:
| Q |
48 |
aatgattgtgttcattggtgcttgccaggacctatagatacttggaatgaga |
99 |
Q |
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|||||||||||||||||||| ||||| ||||||||||| || |||||||||| |
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| T |
15256740 |
aatgattgtgttcattggtgtttgcctggacctatagacacatggaatgaga |
15256689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 15265273 - 15265214
Alignment:
| Q |
40 |
atgtacaaaatgattgtgttcattggtgcttgccaggacctatagatacttggaatgaga |
99 |
Q |
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|||| ||||||||||||||||||||||| ||||| ||||| || ||||| |||||||||| |
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| T |
15265273 |
atgtgcaaaatgattgtgttcattggtgtttgcctggaccaattgatacatggaatgaga |
15265214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 7 - 99
Target Start/End: Complemental strand, 11807015 - 11806923
Alignment:
| Q |
7 |
atccttttccatttgctaaaagggttccaaagaatgtacaaaatgattgtgttcattggtgcttgccaggacctatagatacttggaatgaga |
99 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
11807015 |
atccttttccatttgctaaaacaattccaaagaatgtacaaaacgattgtactcattggtgcttgccaggacctattgatacttggaatgaga |
11806923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 4e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 7 - 99
Target Start/End: Original strand, 51383648 - 51383740
Alignment:
| Q |
7 |
atccttttccatttgctaaaagggttccaaagaatgtacaaaatgattgtgttcattggtgcttgccaggacctatagatacttggaatgaga |
99 |
Q |
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||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
51383648 |
atccttttccatttgctaatggaattccaaagtatgtacaaaatgattgtgttcattggtgtttgccaggacctatagacacttggaatgaga |
51383740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 93
Target Start/End: Complemental strand, 6554224 - 6554179
Alignment:
| Q |
48 |
aatgattgtgttcattggtgcttgccaggacctatagatacttgga |
93 |
Q |
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|||||||||||||||||||| |||||||| ||||||||||| |||| |
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| T |
6554224 |
aatgattgtgttcattggtgtttgccagggcctatagatacatgga |
6554179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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