View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5189-Insertion-5 (Length: 667)
Name: NF5189-Insertion-5
Description: NF5189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5189-Insertion-5 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 548; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 6 - 667
Target Start/End: Complemental strand, 34543776 - 34543120
Alignment:
| Q |
6 |
cactatcgtcctagcatttctccgttctcaacctatgtcattgtccatttgtgcagtgtagtgtgcgaagtcttgcatcaatatggtccaattttcattt |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34543776 |
cactatcgtcctagcatttctccgttctcaacctatgtcattgtccatttgtgcagtgtagtgtgcgaagtcttgcatcaatatggtccaattttcattt |
34543677 |
T |
|
| Q |
106 |
tgaatcagtttagatgtatgtgatcagtatcaccctatcataaaggaccatgatcagatatattccctaattaagcaaagttcgtcaaatgcttctttat |
205 |
Q |
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|||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34543676 |
tgaatcagtttatatgcatgtgatcagtatcaccctatcataaaggacaatgatcatatatattccctaatcaagcaaagttcgtcaaatgcttctttat |
34543577 |
T |
|
| Q |
206 |
gttttgtttattaagttttaattttgagtgaattttctccaactattattgttccccctatgcctnnnnnnnttctattattccccctacactaccgtaa |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34543576 |
gttttgtttattaagttttaattttgagtgaattttctccaactattattgttccccctatgcctcaaaaaattctattattccccctacactaccgtaa |
34543477 |
T |
|
| Q |
306 |
tgcttacaatattatattattccttatgaaaataatattgaggaaatcaacgaaagtggagcgttcattgtcaatctcagcacaaacgctgtggaagata |
405 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34543476 |
tgcttacaatattatattattccttatgaaaataatattgaggaaatcaacgaaagtggagcgttcattgtcaatctcagcacaaacgctgtggaagata |
34543377 |
T |
|
| Q |
406 |
gttttagatataatggtatatatgtggttgagtttttagcatgtatatataaataaataatggtagagttgtaaacttgactatggaataaaaacatatc |
505 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34543376 |
gttttagatataatgatatatatgtggttgagtttttagcatgtatat----ataaataatggtagagttgtaaacttgactatggaataaaaacatata |
34543281 |
T |
|
| Q |
506 |
taatgttaaagaagcgtgtgcatttccccgccaattaaaacctttgaaaatatctcataagtcttagctcaaccaacaaaaatattaaaattattaggct |
605 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||| | |
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| T |
34543280 |
taatgttaaagaagcgtgtgcatttccccgccaattaaaacctttgaaaatgtctcataagtcctagctcaaccaacaaaaatattgaaattattaggtt |
34543181 |
T |
|
| Q |
606 |
ggacgttatgactggggttcgtacccccgacacctccactttatgtttgtgagtttacgata |
667 |
Q |
| |
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|||||| || | |||||||||||||||| ||||| ||||||||||||||||||||| |||| |
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| T |
34543180 |
ggacgtcatcatcggggttcgtacccccggcacct-cactttatgtttgtgagtttatgata |
34543120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 561 - 621
Target Start/End: Original strand, 24406564 - 24406624
Alignment:
| Q |
561 |
cataagtcttagctcaaccaacaaaaatattaaaattattaggctggacgttatgactggg |
621 |
Q |
| |
|
|||||||| ||||||||| |||||||| |||||||||||||| |||||| |||| |||| |
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| T |
24406564 |
cataagtcatagctcaactgacaaaaatgctaaaattattaggccggacgtcatgattggg |
24406624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 662
Target Start/End: Original strand, 26526511 - 26526614
Alignment:
| Q |
558 |
tctcataagtcttagctcaaccaacaaaaatattaaaattattaggctggacgttatgactggggttcgtacccccgacacctccactttatgtttgtga |
657 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||| |||||| | |||| ||||| | |||||| || || | ||||||||||||||| ||||| |
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| T |
26526511 |
tctcataagtcttagctcaactggcaaaaataccgaaattgttaggccgaacgtcatgaccgaggttcgaactccggt-acctccactttatgtgtgtga |
26526609 |
T |
|
| Q |
658 |
gttta |
662 |
Q |
| |
|
||||| |
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|
| T |
26526610 |
gttta |
26526614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 558 - 662
Target Start/End: Complemental strand, 6328304 - 6328201
Alignment:
| Q |
558 |
tctcataagtcttagctcaaccaacaaaaatattaaaattattaggctggacgttatgactggggttcgtacccccgacacctccactttatgtttgtga |
657 |
Q |
| |
|
||||||||||||||||||||| ||||||| | |||||| ||||| ||||||| |||||| ||||||| | |||||| ||||||||||||||| ||||| |
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|
| T |
6328304 |
tctcataagtcttagctcaactggcaaaaatgtcaaaattgttaggttggacgtcatgactagggttcg-aaccccgatacctccactttatgtgtgtga |
6328206 |
T |
|
| Q |
658 |
gttta |
662 |
Q |
| |
|
||||| |
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|
| T |
6328205 |
gttta |
6328201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 558 - 602
Target Start/End: Complemental strand, 30215894 - 30215850
Alignment:
| Q |
558 |
tctcataagtcttagctcaaccaacaaaaatattaaaattattag |
602 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||| |||| |
|
|
| T |
30215894 |
tctcataagtcatagctcaactaacaaaaatattaaaattgttag |
30215850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 662
Target Start/End: Complemental strand, 9506972 - 9506869
Alignment:
| Q |
558 |
tctcataagtcttagctcaaccaacaaaaatattaaaattattaggctggacgttatgactggggttcgtacccccgacacctccactttatgtttgtga |
657 |
Q |
| |
|
||||||||||| ||||| ||| |||||||||| |||||| |||||| |||| | ||||| | |||||| | | ||| ||||||||||| ||| ||||| |
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| T |
9506972 |
tctcataagtcctagcttaactgacaaaaatatcaaaattgttaggccggacatcatgaccgaggttcg-aactccggtacctccactttgtgtgtgtga |
9506874 |
T |
|
| Q |
658 |
gttta |
662 |
Q |
| |
|
||||| |
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|
| T |
9506873 |
gttta |
9506869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 558 - 662
Target Start/End: Original strand, 32947618 - 32947721
Alignment:
| Q |
558 |
tctcataagtcttagctcaaccaacaaaaatattaaaattattaggctggacgttatgactggggttcgtacccccgacacctccactttatgtttgtga |
657 |
Q |
| |
|
||||||||||| ||||||||| |||||||| |||||||| |||||| | |||| |||| || ||||| | |||||||| ||||||||||||| ||||| |
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|
| T |
32947618 |
tctcataagtcctagctcaactgacaaaaatgttaaaattgttaggccgaacgtcttgaccggagttcg-aaccccgacatctccactttatgtgtgtga |
32947716 |
T |
|
| Q |
658 |
gttta |
662 |
Q |
| |
|
||||| |
|
|
| T |
32947717 |
gttta |
32947721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 558 - 651
Target Start/End: Complemental strand, 11081091 - 11080999
Alignment:
| Q |
558 |
tctcataagtcttagctcaaccaacaaaaatattaaaattattaggctggacgttatgactggggttcgtacccccgacacctccactttatgt |
651 |
Q |
| |
|
|||||||||||||| |||||| ||||||| || ||||| ||||| |||||||||||| ||||||| | |||||| ||||||||||||||| |
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|
| T |
11081091 |
tctcataagtcttaactcaactggcaaaaatgttgaaattgctaggccggacgttatgaccggggttc-aaaccccgatacctccactttatgt |
11080999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 561 - 625
Target Start/End: Original strand, 8050483 - 8050547
Alignment:
| Q |
561 |
cataagtcttagctcaaccaacaaaaatattaaaattattaggctggacgttatgactggggttc |
625 |
Q |
| |
|
||||||||||||||||||| |||||||| | ||||| |||||| | | |||||||| ||||||| |
|
|
| T |
8050483 |
cataagtcttagctcaaccgacaaaaatgtcgaaattgttaggccgaatgttatgaccggggttc |
8050547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 560 - 662
Target Start/End: Complemental strand, 28183839 - 28183738
Alignment:
| Q |
560 |
tcataagtcttagctcaaccaacaaaaatattaaaattattaggctggacgttatgactggggttcgtacccccgacacctccactttatgtttgtgagt |
659 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||| ||| | |||| |||||||| ||||| |||||||||||||| ||| ||||||| |
|
|
| T |
28183839 |
tcataagtcttagctcaactgacaaaaatgccgaaattattaggccggatttcttgaccggggttcgaacccc-gacacctccactttgtgtgtgtgagt |
28183741 |
T |
|
| Q |
660 |
tta |
662 |
Q |
| |
|
||| |
|
|
| T |
28183740 |
tta |
28183738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 562 - 662
Target Start/End: Complemental strand, 11109983 - 11109884
Alignment:
| Q |
562 |
ataagtcttagctcaaccaacaaaaatattaaaattattaggctggacgttatgactggggttcgtacccccgacacctccactttatgtttgtgagttt |
661 |
Q |
| |
|
|||||||||||||||||| |||||| |||||| ||| ||||||||| |||||||||||||| | ||||| | ||||||||||||| ||| ||||| |
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|
| T |
11109983 |
ataagtcttagctcaaccggtaaaaatgccaaaattgttaagctggacgtcatgactggggttcg-aaccccggtatctccactttatgtgtgttagttt |
11109885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 583 - 632
Target Start/End: Original strand, 48391712 - 48391761
Alignment:
| Q |
583 |
aaaaatattaaaattattaggctggacgttatgactggggttcgtacccc |
632 |
Q |
| |
|
|||||||| |||||| ||||||||||||| |||||||||||||| ||||| |
|
|
| T |
48391712 |
aaaaatatcaaaattgttaggctggacgtcatgactggggttcgaacccc |
48391761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 592 - 662
Target Start/End: Original strand, 22999107 - 22999176
Alignment:
| Q |
592 |
aaaattattaggctggacgttatgactggggttcgtacccccgacacctccactttatgtttgtgagttta |
662 |
Q |
| |
|
|||||| |||| | |||||| ||||| |||||||| ||||| |||||||||||||| ||| |||||||||| |
|
|
| T |
22999107 |
aaaattgttagtccggacgtcatgaccggggttcgaacccc-gacacctccactttgtgtgtgtgagttta |
22999176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 662
Target Start/End: Complemental strand, 40630296 - 40630196
Alignment:
| Q |
561 |
cataagtcttagctcaaccaacaaaaatattaaaattattaggctggacgttatgactggggttcgtacccccgacacctccactttatgtttgtgagtt |
660 |
Q |
| |
|
|||||||||||| |||||| |||||||| | ||||||||||||| | | | |||| ||||||| || |||| ||||||||||||| | | |||||||| |
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| T |
40630296 |
cataagtcttagttcaaccgacaaaaatgtcaaaattattaggccgaaaatcttgaccggggttc-taacccctacacctccactttgtttgtgtgagtt |
40630198 |
T |
|
| Q |
661 |
ta |
662 |
Q |
| |
|
|| |
|
|
| T |
40630197 |
ta |
40630196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 582 - 626
Target Start/End: Original strand, 1910823 - 1910867
Alignment:
| Q |
582 |
caaaaatattaaaattattaggctggacgttatgactggggttcg |
626 |
Q |
| |
|
||||||| ||||||||||||||| ||| |||||||| |||||||| |
|
|
| T |
1910823 |
caaaaatgttaaaattattaggccggatgttatgaccggggttcg |
1910867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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