View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5189-Insertion-7 (Length: 613)
Name: NF5189-Insertion-7
Description: NF5189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5189-Insertion-7 |
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| [»] scaffold0649 (3 HSPs) |
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Alignment Details
Target: scaffold0649 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: scaffold0649
Description:
Target: scaffold0649; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 7 - 353
Target Start/End: Complemental strand, 6560 - 6219
Alignment:
| Q |
7 |
aagaactatgagtgacagaggcaatttcagttatatagaattggagactcttgcttgctttacacaaagaatataatgatcaagcagtgtgttgattcaa |
106 |
Q |
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| T |
6560 |
aagaactatgagagacaaaggcaatttcagttatatagaattggagacttttgcttgctttacacaaagaatataatgatcaagcagtgtgttgattcaa |
6461 |
T |
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| Q |
107 |
atgttatctgaagaagacaagaaaaaataaaccctaaaagatacacatcaagaatataaatgtttgtgctataaatgaagaaattgaagctccaataacg |
206 |
Q |
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| T |
6460 |
atgttatctgaagaagacaagaaaaaaaa---cctaaaagatacacatcaagaatataaatgtttgtgctataaatgaagaaattgaagctccaataacg |
6364 |
T |
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| Q |
207 |
ctttcatcctttcttcccattattccatcatgtaccagccacaactcttgtgcttgaagttgcgttgtagacctacaacgcacaaaaatagaacagaaac |
306 |
Q |
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| T |
6363 |
ctttcatcctttcttcccattattccatcatgtaccatacacaatgcttgtgcttgaagttgggttgtagacctacaacgcacaaaaatagaacagaaac |
6264 |
T |
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| Q |
307 |
acgagnnnnnnnntaaatgcataattcaatatcggaagaaagaaata |
353 |
Q |
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| T |
6263 |
acgag--aaaaaataaatgcataattcaatatcggaagaaagaaata |
6219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0649; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 349 - 475
Target Start/End: Complemental strand, 6199 - 6074
Alignment:
| Q |
349 |
aaatacagtcctatacatgtaccaagagttgtgtttacatagattctatgacaatatcagaagaacaacaatatccaagaattggtgtagaaataaagta |
448 |
Q |
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| T |
6199 |
aaatacagtc-tatacatgtaccaagagttgtgtttacatagattctatggcaatatcagaagaacaacaatatccaagaattggtgtagaaataaagta |
6101 |
T |
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| Q |
449 |
attctcacttcatgaatcattatggat |
475 |
Q |
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| T |
6100 |
attctcacttcatgaatcattatggat |
6074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0649; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 474 - 613
Target Start/End: Complemental strand, 6027 - 5888
Alignment:
| Q |
474 |
ataatgtacttttcatgcttcgannnnnnnaatacgtttgtagaccaacccggtaacgaatttccaaaagggagtgaataatgtaccttgaacaatttca |
573 |
Q |
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| T |
6027 |
ataatgtacttttcatgcttcggtttttttaatacgtttgtagaccaacccggtaacgaatttccaaaagggagggaataatgtaccttgaacaatttca |
5928 |
T |
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| Q |
574 |
tcttcatagttataataaatataagaaaaacaaaagttta |
613 |
Q |
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| T |
5927 |
tcttcatagttataataaatataagaaaaacaaaagttta |
5888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 421 - 475
Target Start/End: Complemental strand, 20968400 - 20968346
Alignment:
| Q |
421 |
atccaagaattggtgtagaaataaagtaattctcacttcatgaatcattatggat |
475 |
Q |
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| T |
20968400 |
atccaagaactggtgtagaaataaagtaattctcacttcatgaatcatcatggat |
20968346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 85 - 237
Target Start/End: Complemental strand, 20968821 - 20968671
Alignment:
| Q |
85 |
atcaagcagtgtgttgattcaaatgttatctgaagaagacaagaaaaaataaaccctaaaagatacacatc---aagaatataaatgtttgtgctataaa |
181 |
Q |
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| T |
20968821 |
atcaagcagtgagttgcttcaaatgttatctaaaaaagacgagaaaaaa-----cctaaaagaaacacatcaagaagaacataattgtttgtgctataaa |
20968727 |
T |
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| Q |
182 |
tgaagaaattgaagctccaataacgctttcatcctttcttcccattattccatcat |
237 |
Q |
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| T |
20968726 |
tgaagatattgcagctctagtgactcgatcttcctttcttccaatcattccatcat |
20968671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 85 - 243
Target Start/End: Complemental strand, 20981651 - 20981494
Alignment:
| Q |
85 |
atcaagcagtgtgttgattcaaatgttatctgaagaagacaagaaaaaataaaccctaaaagatacacatc---aagaatataaatgtttgtgctataaa |
181 |
Q |
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| T |
20981651 |
atcaagcaatgagttgcttcaaatattgtcttaaaaagacaagaaaaaa-----cctaaaagaaacacatcaagaagaacataattgtttgtgctataat |
20981557 |
T |
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| Q |
182 |
tg-aagaaattgaagctccaataacgctttcatcctttcttcccattattccatcatgtacca |
243 |
Q |
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| T |
20981556 |
tgaaagatattgcagctccagtgacccaatcttcctttcttccaatcattccaccatgcacca |
20981494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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