View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5189-Insertion-8 (Length: 553)
Name: NF5189-Insertion-8
Description: NF5189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5189-Insertion-8 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 518; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 8 - 553
Target Start/End: Complemental strand, 5414900 - 5414355
Alignment:
| Q |
8 |
tcataggcatagctacctttctatgaagctcaagagataaagcttcatagaaagtgtgtttgccagtaaaatggtcgttagtgtcactttaatgaaaaat |
107 |
Q |
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| T |
5414900 |
tcattggcatagctacctttctatgaagctcaagagacaaagcttcatagaaagtgtgtttgtcagtaaaatggtcgttagtgtcactttaattaaaaat |
5414801 |
T |
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| Q |
108 |
aagaaaagccacgcgagattgtttgtttttgacaaggatttttggtgtgctgttgcaaattgttgtaggtatggtaaagtgttcaagtcacacatatttg |
207 |
Q |
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| T |
5414800 |
aagaaaagccacgcgagattgtttgtttttgacaaggatttgtggtgtgctgttgcaaattgttgcaggtatggtaaagtgttcaagtcacacatatttg |
5414701 |
T |
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| Q |
208 |
gaagccctaccattgtttcaacagatgcagatgtgaataagtttatactacaaagtgatgcaaaggtttttgttccttcttatcccaagtcattgatgca |
307 |
Q |
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| T |
5414700 |
gaagccctaccattgtttcaacagatgcagatgtgaataagtttatactacaaagtgatgcaaaggtttttgttccttcttatcccaagtcattgatgca |
5414601 |
T |
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| Q |
308 |
gttaatgggagagtcttctattttgctcatcaatggaaccttgcaaaggagaatacatggacttattggtgctttcttcaagtctcaacagttaaaggtt |
407 |
Q |
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| T |
5414600 |
gttaatgggagagtcttctattttgctcatcaatggaaccttgcaaaggagaatacatggacttattggtgctttcttcaagtctcaacagttaaaggtt |
5414501 |
T |
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| Q |
408 |
cagattacctcagatatgcagaagtatgtacaagaatcaatggcaaattggaaagaggaccaacctatatacatacaagatgaaacaaaaaaggttacct |
507 |
Q |
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| T |
5414500 |
cagattacctcagatatgcagaagtatgtacaagaatcaatggcaaattggaaagaggaccaacctatatacatacaagatgaaacaaaaaaggttacct |
5414401 |
T |
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| Q |
508 |
ctctttccttccccctcagtttctgagtgtgtgtgagtttgtacta |
553 |
Q |
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| T |
5414400 |
ctgtttccttccccctcagtttctgagtgtgtgtgagtttgtacta |
5414355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 477 - 521
Target Start/End: Complemental strand, 14087728 - 14087684
Alignment:
| Q |
477 |
tacatacaagatgaaacaaaaaaggttacctctctttccttcccc |
521 |
Q |
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| T |
14087728 |
tacatacaagatgaaacaaaaaaggctacctctttttccttcccc |
14087684 |
T |
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