View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5189-Insertion-9 (Length: 457)
Name: NF5189-Insertion-9
Description: NF5189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5189-Insertion-9 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 8 - 457
Target Start/End: Complemental strand, 44704210 - 44703761
Alignment:
| Q |
8 |
aaacctaccttcagcgtgaagagatcatcaatgatcggacgagcacgtactggagtaacagtggaggtgtacgataaccctggtgaggagtaccacattg |
107 |
Q |
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| T |
44704210 |
aaacctaccttcagtgtgaagaggtcatctatgatcggacgagcacgtactggagtaacagtggaggtgtacgataaccctggtgaggagtaccacattg |
44704111 |
T |
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| Q |
108 |
aaggttgcttctctcaacgttgttgcaccgtttttaacgcaatgaaggaaaacgtagctgagattcatcgcaaagtggaccccaccacaggtgttatgct |
207 |
Q |
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| T |
44704110 |
aaggttgcttctctcaacgttgttgcacggtttttaacggaatgaaggaaaacgtagctgagattcatcgcaaagtggaccccaccacaggtgttatgct |
44704011 |
T |
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| Q |
208 |
tggaaaagaagtgttatctctttgtgttaagcctggttttgacgctgcctttgctatgggattcgttctcgtccttgatcaaatcaacggtgatggttca |
307 |
Q |
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| T |
44704010 |
tggaaaagaagtgttatctctttgtgttaagcctggttttgacgctgcctttgctatgggattcgttctcgtccttgatcaaatcaacggtgatggttca |
44703911 |
T |
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| Q |
308 |
attggtgatgatgcaactgcggagcctgcggtacaccctactacagaagaataaattactctgggttttgtttaatttaatttaacctactaatctttgg |
407 |
Q |
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| T |
44703910 |
attggtgatgatgcaactgcggagcctacggtacaccctactacagaagaataaattactctgggttttgtttaatttaatttaacctactaatctttgg |
44703811 |
T |
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| Q |
408 |
agtgtccctcacgaaggggagttggatccactactctagatctctgcccc |
457 |
Q |
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| T |
44703810 |
agtgtccctcacgaaggggagttggatccactactctagatctctgcccc |
44703761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 8 - 357
Target Start/End: Complemental strand, 44714913 - 44714564
Alignment:
| Q |
8 |
aaacctaccttcagcgtgaagagatcatcaatgatcggacgagcacgtactggagtaacagtggaggtgtacgataaccctggtgaggagtaccacattg |
107 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| ||||| | ||||| ||||||||||||||||||||||| |||||||||||||| || | |
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| T |
44714913 |
aaaccaaccttcagcgtgaagagatcatcaatgatcggacgaccacgtgcgggagtgacagtggaggtgtacgataacccaggtgaggagtaccatatcg |
44714814 |
T |
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| Q |
108 |
aaggttgcttctctcaacgttgttgcaccgtttttaacgcaatgaaggaaaacgtagctgagattcatcgcaaagtggaccccaccacaggtgttatgct |
207 |
Q |
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| T |
44714813 |
aagggtgtttctctcaacgtggttgcaaagtttttaacgcgatgaaggaaattgtggctgagatttatcgtaaagtggaccccactacaggtaatacgct |
44714714 |
T |
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| Q |
208 |
tggaaaagaagtgttatctctttgtgttaagcctggttttgacgctgcctttgctatgggattcgttctcgtccttgatcaaatcaacggtgatggttca |
307 |
Q |
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| T |
44714713 |
tgggaaggaagtgttctctctttgtgttaagcctggttttgatgctgcttttgcaatgggatttattctcgtccttgatcatatcagcggtgatgattcc |
44714614 |
T |
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| Q |
308 |
attggtgatgatgcaactgcggagcctgcggtacaccctactacagaaga |
357 |
Q |
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| T |
44714613 |
cttgatgatgatgcaactgcggagtcttctgtgcatcctaccacagaaga |
44714564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 63 - 300
Target Start/End: Original strand, 2278054 - 2278291
Alignment:
| Q |
63 |
taacagtggaggtgtacgataaccctggtgaggagtaccacattgaaggttgcttctctcaacgttgttgcaccgtttttaacgcaatgaaggaaaacgt |
162 |
Q |
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||||||||||||| |||||||||| |||| |||||||| ||||||||| || ||| | ||| | || || | ||||||| || | ||| || || |
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| T |
2278054 |
taacagtggaggtacacgataacccaggtgtggagtacctcattgaagggtgtttcccacaaagatgctgtaagatttttaatgccacaaagaaattagt |
2278153 |
T |
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| Q |
163 |
agctgagattcatcgcaaagtggaccccaccacaggtgttatgcttggaaaagaagtgttatctctttgtgttaagcctggttttgacgctgcctttgct |
262 |
Q |
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| T |
2278154 |
ggctgagattcgtcgtaaagtggaccccaccactagtgttatgcttgggaaagaagtgttcatgctttgtgttcaacctgattttgatgtgtcctttgcc |
2278253 |
T |
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| Q |
263 |
atgggattcgttctcgtccttgatcaaatcaacggtga |
300 |
Q |
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| T |
2278254 |
atgggattggttttggtacttgatcaaatcaatggtga |
2278291 |
T |
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