View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5189_high_1 (Length: 1092)
Name: NF5189_high_1
Description: NF5189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5189_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 813; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 813; E-Value: 0
Query Start/End: Original strand, 51 - 1076
Target Start/End: Complemental strand, 3317406 - 3316371
Alignment:
| Q |
51 |
ctatagctcctagtaattgaaaccgttaactaaaaaacatgaacagatccattggtgctagattggaacaaaccaaattggctaatgtggtgagtgaatc |
150 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||| ||||||||||||| |
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| T |
3317406 |
ctatagctcctagtaatcgaaaccgttaactaaaaaacatgaacagatccattggtgctagattggaacgaacccaattcgctaatttggtgagtgaatc |
3317307 |
T |
|
| Q |
151 |
cacctctaatgagttgaaaccttgctctgttgacctgaatccaactccaaacagaacccactcccacaatttctctttctgtgtgctgagagttgtgtcg |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3317306 |
cacctctaatgagttgaaaccttgctctgttgacctgaatccaactccaaacagaacccactcccacaatttctctttctgtgtgctgagagttgtgtcg |
3317207 |
T |
|
| Q |
251 |
tggtttgtgaatttgcccttcaattttgaattgtgatgctatattctacatgctgtga-----nnnnnnnnnnnnnnnngtgcatatcttgtacttttta |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3317206 |
tggtttgtgaatttgcccttcaattttgaattgtgatgctatattctacatgctgtgaattgtttttttttttttttttgtgcatatcttgtacttttta |
3317107 |
T |
|
| Q |
346 |
tacttgtattaggcattacatgttacatagtaaatttatgctacacgtatcatgtttatgtgtcagtctacctatccatagcattatatgctattaaaat |
445 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3317106 |
tacttgtattaggcattacatgttacatagtaaatttatgctacatgtatcatgtttatgtgtcagtctacctacccatagcattatatgctattaaaat |
3317007 |
T |
|
| Q |
446 |
gtttgggaaacaatacctgtagacccaggnnnnnnnnccagaggcatgcttattgatatagatttaataagttttgatttattgagatgaaatggtaaca |
545 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
3317006 |
gtttgggaaacaatacctgtagacccaggaaaaaaaaccagaggcatgcttattgatatagatttaatcagttttgatttatttagatgaaatggtaaca |
3316907 |
T |
|
| Q |
546 |
ttaattgcaaagtaatgctttctacaagtaatttctatggcgttgaagccagaataatatagatgaaccac------aatcattcggtgtataaataaaa |
639 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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|
| T |
3316906 |
ttaattgcaaagtaatgctttctacaagtaatttctatggcgttgaagccagaataatatagatgaaccacaatcataatcattcagtgtataaataaaa |
3316807 |
T |
|
| Q |
640 |
gaacatatgccatagtgaagaattggtagattttagtcaaaaacgtaaatgcatgctgtgtttatgtgtttgctgcataaacttttgaccactttaattt |
739 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3316806 |
gaacatatgccatagtgaagaattggtagattttagtcaaaaacgtaaatgcatgctgtgtttatgtgtttgctgcataaacttttgaccactttaattt |
3316707 |
T |
|
| Q |
740 |
cagaaataatgcttcattttgaaaataaatctataactggttttgtccactgnnnnnnnntctataacttgttggcatctctcctacttcagccttttgt |
839 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
3316706 |
cagaaataatgcttcattttgaaaataaatctataactggttttgtccactgaaaaaaaatctataacttgttggcatctctcctacttcatccttttgt |
3316607 |
T |
|
| Q |
840 |
gatttccatgagctgcaacacccttggtttcttttcttttaagtcttagttcatgaccttacttttttgtatctgcaggaggtggagtactcaggtgggg |
939 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3316606 |
gatttccatgagctgcaacacccttggtttcttttc-tttaagtcttagttcatgaccttacttttttgtatttgcaggaggtggagtactcaggtgggg |
3316508 |
T |
|
| Q |
940 |
gtctaaatttccgttgatgctccagttcttacgnnnnnnngtcttctcttggagtaatttaaggagttggtactgttagcatgttgtaatggtcacaaag |
1039 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3316507 |
gtctaaatttccgttgatgctccagttcttacgtttttttgtcttctcttggagtaatttaaggatttggtactgttagcatgttgtaatggtcacaaag |
3316408 |
T |
|
| Q |
1040 |
gatctcattcggcctgatttgtttcttatttatgatt |
1076 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||| |
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| T |
3316407 |
gatctcattaggcctgatttgtttcttatttatgatt |
3316371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 3318207 - 3318169
Alignment:
| Q |
14 |
atcaattttcctccagtgtacagtttagcatttctgtct |
52 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
3318207 |
atcaattttcctccagtgtacagtttagcatttctgtct |
3318169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 801 - 878
Target Start/End: Complemental strand, 3315245 - 3315168
Alignment:
| Q |
801 |
ctataacttgttggcatctctcctacttcagccttttgtgatttccatgagctgcaacacccttggtttcttttcttt |
878 |
Q |
| |
|
|||||||||||| | |||||||| |||||| |||||||||| || |||||| ||||| || || |||||||| |||| |
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|
| T |
3315245 |
ctataacttgtttgaatctctcccacttcatccttttgtgactttcatgagttgcaatgcctttagtttctttgcttt |
3315168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 626 - 1076
Target Start/End: Complemental strand, 10021366 - 10020916
Alignment:
| Q |
626 |
gtgtataaataaaagaacatatgccatagtgaagaattggtagattttagtcaaaaacgtaaatgcatgctgtgtttatgtgtttgctgcataaactttt |
725 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10021366 |
gtgtataaataaaagaacatatgccatagtgaagaattggtagattttagtcaaaaacgtaaatgcatgctgtgtttatgtgtttgctgcataaactttt |
10021267 |
T |
|
| Q |
726 |
gaccactttaatttcagaaataatgcttcattttgaaaataaatctataactggttttgtccactgnnnnnnnntctataacttgttggcatctctccta |
825 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
10021266 |
gaccactttaatttcagaaataatgcttcattttgaaaataaatctataactggttttgtccactgaaaaaaaatctataacttgttggcatctctccta |
10021167 |
T |
|
| Q |
826 |
cttcagccttttgtgatttccatgagctgcaacacccttggtttcttttcttttaagtcttagttcatgaccttacttttttgtatctgcaggaggtgga |
925 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10021166 |
cttcagccttttgtgatttccatgagctgcaacacccttggtttcttttcttttaagtcttagttcatgaccttacttttttgtatctgcaggaggtgga |
10021067 |
T |
|
| Q |
926 |
gtactcaggtgggggtctaaatttccgttgatgctccagttcttacgnnnnnnngtcttctcttggagtaatttaaggagttggtactgttagcatgttg |
1025 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10021066 |
gtactcaggtgggggtctaaatttccgttgatgctccagttcttacgtttttttgtcttctcttggagtaatttaaggagttggtactgttagcatgttg |
10020967 |
T |
|
| Q |
1026 |
taatggtcacaaaggatctcattcggcctgatttgtttcttatttatgatt |
1076 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10020966 |
taatggtcacacaggatctcattcggcctgatttgtttcttatttatgatt |
10020916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 862 - 907
Target Start/End: Original strand, 10227601 - 10227646
Alignment:
| Q |
862 |
cttggtttcttttcttttaagtcttagttcatgaccttactttttt |
907 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
10227601 |
cttggtttcttttcttttaagtcttagttcatgaccttaccttttt |
10227646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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