View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5189_high_15 (Length: 273)
Name: NF5189_high_15
Description: NF5189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5189_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 44248359 - 44248619
Alignment:
| Q |
1 |
cattccctcttacaattttcttctcaattatgctattaagggtagtccttaaagcctttctcattggaacataaaatccaatatcagtataattaaattt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44248359 |
cattccctcttacaattttcttctcaattatgctattaagggtagtccttaaagcctttctcattggaacataaaatccaatatcagtataattaaattt |
44248458 |
T |
|
| Q |
101 |
aaattcatgacatctaaaacaacctataattgaaccaccctcatagtaaattgaaggaacatccgtaaaccaatgaccaaatgacaacacaatcaagtca |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44248459 |
aaattcatgacatctaaaacaacctataattgaaccaccctcatagtaaattgaaggaacatccgtaaaccaatgaccaaatgacaacacaatcgagtca |
44248558 |
T |
|
| Q |
201 |
atttgatctatatccccagcccacatctgatttacttgatctaaatatattgtattatatt |
261 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44248559 |
atttgatctatatccctagcccacatctgatttacttgatctaaatatattgtattatatt |
44248619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 2 - 261
Target Start/End: Complemental strand, 15284200 - 15283941
Alignment:
| Q |
2 |
attccctcttacaattttcttctcaattatgctattaagggtagtccttaaagcctttctcattggaacataaaatccaatatcagtataattaaattta |
101 |
Q |
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||||||| | || |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
15284200 |
attccctttaaccattttcctctcaattatgctattaagggtagtccttaaagcctttctcattggaatataaaatccaatatcactataattaaattta |
15284101 |
T |
|
| Q |
102 |
aattcatgacatctaaaacaacctataattgaaccaccctcatagtaaattgaaggaacatccgtaaaccaatgaccaaatgacaacacaatcaagtcaa |
201 |
Q |
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||||| |||||||||||||||||||||| |||| |||| ||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||| | |
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| T |
15284100 |
aattcttgacatctaaaacaacctataactgaatcaccttcatagtaaattgaaggaatgtccaaaaaccaatgaccaaatgacaaaacaatcaagtcca |
15284001 |
T |
|
| Q |
202 |
tttgatctatatccccagcccacatctgatttacttgatctaaatatattgtattatatt |
261 |
Q |
| |
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||| ||| ||||||| |||||||| | |||||| ||||| ||||||||||||||||||| |
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|
| T |
15284000 |
ttttatccatatcccttgcccacatttcatttacatgatccaaatatattgtattatatt |
15283941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 15287733 - 15287813
Alignment:
| Q |
17 |
tttcttctcaattatgctattaagggtagtccttaaagcctttctcattggaacataaaatccaatatcagtataattaaa |
97 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||| ||||||||||| | |||||||||||| |||| | ||||| |||||| |
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| T |
15287733 |
tttcctctcaattatactattaagggtagtcctcaaagcctttcttaatggaacataaaaatcaatttgagtatgattaaa |
15287813 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 15265594 - 15265631
Alignment:
| Q |
24 |
tcaattatgctattaagggtagtccttaaagcctttct |
61 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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| T |
15265594 |
tcaattatgctattaagggtagtccttaaagcctttct |
15265631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 15262693 - 15262614
Alignment:
| Q |
17 |
tttcttctcaattatgctattaagggtagtccttaaagcctttctcattggaacataaaatccaatatcagtataattaa |
96 |
Q |
| |
|
|||| |||||||||||| |||||| |||||||||||||||||| | |||||| ||||| || |||||||| ||||||| |
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| T |
15262693 |
tttcctctcaattatgccattaagacaagtccttaaagcctttcttaatggaacgtaaaaaccgatatcagtgtaattaa |
15262614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 15257069 - 15257141
Alignment:
| Q |
24 |
tcaattatgctattaagggtagtccttaaagcctttctcattggaacataaaatccaatatcagtataattaa |
96 |
Q |
| |
|
|||||||| |||||||| ||||| |||||||||||||||| | | ||||||| ||||| ||||||| ||||| |
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|
| T |
15257069 |
tcaattatactattaagagtagttcttaaagcctttctcaatacatcataaaacccaatttcagtatgattaa |
15257141 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 129; Significance: 8e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 51383386 - 51383131
Alignment:
| Q |
1 |
cattccctcttacaattttcttctcaattatgctattaagggtagtccttaaagcctttctcattggaacataaaatccaatatcagtataattaaattt |
100 |
Q |
| |
|
|||||||| | |||| |||| | |||||||| |||||||| ||||||||||||||||||||||| | |||||||| ||||||||| ||||| |||||||| |
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| T |
51383386 |
cattccctttaacaactttcctttcaattatactattaagagtagtccttaaagcctttctcatcgcaacataaattccaatatcggtatagttaaattt |
51383287 |
T |
|
| Q |
101 |
aaattcatgacatctaaaacaacctataattgaaccaccctcatagtaaattgaaggaacatccgtaaaccaatgaccaaatgacaacacaatcaagtca |
200 |
Q |
| |
|
|| ||||||||| |||||||||||||||| || |||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||| |
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| T |
51383286 |
aagatcatgacatttaaaacaacctataatagactcaccctcatagtaaattgaaggaa---ccataaaccaatgaccaaatgataacacaatcaagtcc |
51383190 |
T |
|
| Q |
201 |
atttgatctatatccccagcccacatctgatttacttgatctaaatatattgtattata |
259 |
Q |
| |
|
|||||||||||||| | ||||||| ||| ||| || ||||| ||||| ||||||||||| |
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|
| T |
51383189 |
atttgatctatatctctagcccacctctcattgacatgatccaaatacattgtattata |
51383131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 11807277 - 11807535
Alignment:
| Q |
1 |
cattccctcttacaattttcttctcaattatgctattaagggtagtccttaaagcctttctcattggaacataaaatccaatatcagtataattaaattt |
100 |
Q |
| |
|
|||||||| | || |||||| ||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||| || |||| |
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| T |
11807277 |
cattccctttaaccattttcctctcaattatggtattaagggcaatccttaaagcctttctcattggaacataaaatccaatatcattatatttcgattt |
11807376 |
T |
|
| Q |
101 |
aaattcatgacatctaaaacaacctataattgaaccaccctcatagtaaattgaaggaacatccgtaaaccaatgaccaaatgacaacacaatcaagtca |
200 |
Q |
| |
|
|| ||||||||| || |||||||||||| |||| || ||||||||||| |||||||| ||| ||||||||||||||||||||||| ||||||||| |
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|
| T |
11807377 |
taaatcatgacatatagaacaacctataactgaatcattctcatagtaaactgaaggaatgtccaaaaaccaatgaccaaatgacaacataatcaagtcc |
11807476 |
T |
|
| Q |
201 |
atttgatctatatccccagcccacatctgatttacttgatctaaatatattgtattata |
259 |
Q |
| |
|
||||||||||||||| ||||| ||| | |||| ||||| |||| |||||||||||| |
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|
| T |
11807477 |
atttgatctatatcctttgcccaattctcacttacatgatccaaatgtattgtattata |
11807535 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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