View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5189_high_2 (Length: 757)
Name: NF5189_high_2
Description: NF5189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5189_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 470; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 10 - 740
Target Start/End: Original strand, 25615616 - 25616341
Alignment:
| Q |
10 |
catcatcaatacaagttagaagctgtgggatggaggaaacagaacaacatttattattcgattgtccaatgttttcttttttgtgggtggaaattttgag |
109 |
Q |
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| T |
25615616 |
catcatcaatacaagttagaagctgtgggatggaggaaatagaacaacatttattattcgattgtccaatgttttctttgttgtgggtggaaattttgag |
25615715 |
T |
|
| Q |
110 |
atggctcgaggacttctatggtagtgcgttctggtttaagttagcacagcagttgctgtttttcatataaatgttgccgcaggattaagtgagtttatca |
209 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||| |
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| T |
25615716 |
atggctcgaggacttctatggtagtgcgtactggtttaagttagcacagcagttgctgcttttcatataaatgttgccgcaggattaagttaatttatca |
25615815 |
T |
|
| Q |
210 |
attgtcttgtgcatatcaactgggtatgactgtttcataagtgtggtccattgttgaacttggagttaaagtgcgcgcaaatgatgaatgcagtggaaga |
309 |
Q |
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| T |
25615816 |
attgtcttgtgcatatcaactgggtatgactgtttcaaaagtatggttcattgttgaacttggagttaaagtgcgcgcaaatgatgaatgcagtggaaga |
25615915 |
T |
|
| Q |
310 |
agggttgcatatgttcaatgataggggtgatcttaaaattttctactggtttatttcgtagagtttgtcaattctagtgtcctatcagtgggtgtgggtg |
409 |
Q |
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| T |
25615916 |
agggtggcatatgcttaatgataggagtgatcttaaaatattctactggtttatttcatagagttcgacaattctagtgtcctatcggtgggtgtggatg |
25616015 |
T |
|
| Q |
410 |
ggatttgcttatgtagctatgtagtacactttgatatatcatttactgtatattaatattaacatatcctgtgcttcgattagttagttatcaatatatt |
509 |
Q |
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||||||||||||||| |||| |||||||||||||||||||||||| |||||||||| |||| |||||||||||| | |||||||||||||||||| | |
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| T |
25616016 |
ggatttgcttatgtaattatgcagtacactttgatatatcatttac--tatattaatagtaacgtatcctgtgctttggttagttagttatcaatatggt |
25616113 |
T |
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| Q |
510 |
tttccatttcaataaagaaaagtctgggatacttttagaatttttactgagctagggggtgatttgcttaggaataggcattactcggttaaatccggta |
609 |
Q |
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| T |
25616114 |
ttgccatttcaaaaaagaagagtatgggattcttttagaatttctactgagctagggggtgattctcttaggaatgggcgttactcggttaaatccaact |
25616213 |
T |
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| Q |
610 |
ttaaccttattgcgaggcacaaattgcataacgacaaattctatgcagaaggtgattgaaatgatgtacggcaagtccttgctccacctaaacctaaata |
709 |
Q |
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|||||| || ||||| ||| |||||||||||||||||| ||||| |||||||||||||||||| ||| |||||||||| |||||||| ||||| | |
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| T |
25616214 |
acaaccttcttacgagggacatattgcataacgacaaattttatgc---aggtgattgaaatgatgtgtggcgagtccttgctacacctaaagctaaaaa |
25616310 |
T |
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| Q |
710 |
tctgttgtggcgcatttgtctgggttgtatc |
740 |
Q |
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| T |
25616311 |
tttgttgtggcacatttgtcgggggtgtatc |
25616341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 213 - 740
Target Start/End: Complemental strand, 25612416 - 25611891
Alignment:
| Q |
213 |
gtcttgtgcatatcaactgggtatgactgtttcataagtgtggtccattgttgaacttggagttaaagtgcgcgcaaatgatgaatgcagtggaagaagg |
312 |
Q |
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||||||||||||| ||||||| |||||| |||| ||||||||| ||||||| |||||||| || |||||||| | |||||||||| ||||||||||||| |
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| T |
25612416 |
gtcttgtgcatattaactgggcatgact--ttcaaaagtgtggttcattgttcaacttggattttaagtgcgcacgaatgatgaatacagtggaagaagg |
25612319 |
T |
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| Q |
313 |
gttgcatatgttcaatgataggggtgatcttaaaattttctactggtttatttcgtagagtttgtcaattctagtgtcctatcagtgggtgtgggtggga |
412 |
Q |
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| T |
25612318 |
gttgcatatgttcaatgataggagtgatcttaaaattttctactggtttatttgatagagtttgtcaattctagtgtcctatcagtgggtgtgggtggga |
25612219 |
T |
|
| Q |
413 |
tttgcttatgtagctatgtagtacactttgatatatcatttactgtatattaatattaacatatcctgtgcttcgattagttagttatcaatatattttt |
512 |
Q |
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| T |
25612218 |
tttgcttatgtagctatgtagtacactttgatatatcatttactgtatattaatattaacatatcctctgctatgattagttagttatcaatatattttt |
25612119 |
T |
|
| Q |
513 |
ccatttcaataaagaaaagtctgggatacttttagaatttttactgagctagggggtgatttgcttaggaataggcattactcggttaaatccggtatta |
612 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25612118 |
ccatttcaataaagaaaagtctgggatacttttagaatttttactgagctagggggtgattcgcttaggaataggcattactcggttaaatccggtatta |
25612019 |
T |
|
| Q |
613 |
accttattgcgaggcacaaattgcataacgacaaattctatgcagaaggtgattgaaatgatgtacggcaagtccttgctccacctaaacctaaatatct |
712 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
25612018 |
accttattgcgaggcacaaattgcataacgacaaattctatgcagaaggtgattgaaatgatgtatggcaagtccttgctccacctaaacctaaatatct |
25611919 |
T |
|
| Q |
713 |
gttgtggcgcatttgtctgggttgtatc |
740 |
Q |
| |
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|||||||||||||| ||||||||||||| |
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| T |
25611918 |
gttgtggcgcatttatctgggttgtatc |
25611891 |
T |
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